I would like to remove characters from column 7 so that from an input file looking like this:
>HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD
I get something like that in an output file:
... (13 Replies)
I have a large text-file with tab-delimited genetic data that looks like:
KSC112 KSC234 0 0 1 1 A G C T
I simply wan to delete the first column, but since the file has 600 000 columns, it is not possible with awk (seems to be limited at 32k columns).
Does anyone have an idea how to do this? (2 Replies)
I want to add a new column to a tab delimited text file. It will be the first column and it will just be 1's. How do I go about doing that? Thanks! (1 Reply)
Hi all,
I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such:
1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
I have a file which looks like this:
73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com
73450 articles and news developmental psychology 2006-03-30 16:22:40 2 http://www.apa.org
73450 articles and news developmental psychology 2006-03-30... (1 Reply)
I have a file having the following entries:
test1 test2 test3
11 22 33
22 44 66
99 99 44
---
I want to add a column so that the above file becomes:
test1 test2 test3 notest
11 22 33 *
22 44 66 *
99 99 44 *
---
Thanks (6 Replies)
I am fairly new to programming and trying to resolve this problem. I have the file like this.
CHROM POS REF ALT 10_sample.bam 11_sample.bam 12_sample.bam 13_sample.bam 14_sample.bam 15_sample.bam 16_sample.bam
tg93 77 T C T T T T T
tg93 79 ... (4 Replies)
Hi all ,
I have a file having 12 columns tab delimited .
I need to read this file and remove the column 3 and column 4 and insert a word in column 3 as "AVIALABLE "
Is there a way to do this . I am trying like below
Thanks
DJ
cat $FILENAME|awk -F"\t" '{ print $1 "\t... (3 Replies)
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
... (2 Replies)
Discussion started by: YogeshG
2 Replies
LEARN ABOUT OSF1
xcutsel
xcutsel(1X)xcutsel(1X)NAME
xcutsel - interchange between cut buffer and selection
SYNOPSIS
xcutsel [-toolkitoption...] [-selection selection] [-cutbuffer number]
OPTIONS
xcutsel accepts all of the standard X Toolkit command line options as well as the following: This option specifies the name of the selec-
tion to use. The default is PRIMARY. The only supported abbreviations for this option are "-select", "-sel" and "-s", as the standard
toolkit option "-selectionTimeout" has a similar name. This option specifies the cut buffer to use. The default is cut buffer 0.
DESCRIPTION
The xcutsel program is used to copy the current selection into a cut buffer and to make a selection that contains the current contents of
the cut buffer. It acts as a bridge between applications that do not support selections and those that do.
By default, xcutsel will use the selection named PRIMARY and the cut buffer CUT_BUFFER0. Either or both of these can be overridden by com-
mand line arguments or by resources.
An xcutsel window has the following buttons: When this button is pressed, xcutsel exits. Any selections held by xcutsel are automatically
released. When this button is pressed, xcutsel copies the current selection into the cut buffer. When this button is pressed, xcutsel
converts the current contents of the cut buffer into the selection.
The button labels reflect the selection and cutbuffer selected by command line options or through the resource database.
When the "copy 0 to PRIMARY" button is activated, the button will remain inverted as long as xcutsel remains the owner of the selection.
This serves to remind you which client owns the current selection. Note that the value of the selection remains constant; if the cutbuffer
is changed, you must again activate the copy button to retrieve the new value when desired.
X DEFAULTS
This program accepts all of the standard X Toolkit resource names and classes as well as: This resource specifies the name of the selection
to use. The default is PRIMARY. This resource specifies the number of the cut buffer to use. The default is 0.
WIDGET NAMES
The following instance names may be used when user configuration of the labels in them is desired: This is the "copy SELECTION to BUFFER"
button. This is the "copy BUFFER to SELECTION" button. This is the "quit" button.
BUGS
There is no way to change the name of the selection or the number of the cut buffer while the program is running.
SEE ALSO X(1X), xclipboard(1X), xterm(1X), text widget documentation, individual client documentation for how to make a selection.
AUTHOR
Ralph R. Swick, DEC/MIT Project Athena
xcutsel(1X)