I would like to remove characters from column 7 so that from an input file looking like this:
>HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD
I get something like that in an output file:
... (13 Replies)
I have a large text-file with tab-delimited genetic data that looks like:
KSC112 KSC234 0 0 1 1 A G C T
I simply wan to delete the first column, but since the file has 600 000 columns, it is not possible with awk (seems to be limited at 32k columns).
Does anyone have an idea how to do this? (2 Replies)
I want to add a new column to a tab delimited text file. It will be the first column and it will just be 1's. How do I go about doing that? Thanks! (1 Reply)
Hi all,
I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such:
1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
I have a file which looks like this:
73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com
73450 articles and news developmental psychology 2006-03-30 16:22:40 2 http://www.apa.org
73450 articles and news developmental psychology 2006-03-30... (1 Reply)
I have a file having the following entries:
test1 test2 test3
11 22 33
22 44 66
99 99 44
---
I want to add a column so that the above file becomes:
test1 test2 test3 notest
11 22 33 *
22 44 66 *
99 99 44 *
---
Thanks (6 Replies)
I am fairly new to programming and trying to resolve this problem. I have the file like this.
CHROM POS REF ALT 10_sample.bam 11_sample.bam 12_sample.bam 13_sample.bam 14_sample.bam 15_sample.bam 16_sample.bam
tg93 77 T C T T T T T
tg93 79 ... (4 Replies)
Hi all ,
I have a file having 12 columns tab delimited .
I need to read this file and remove the column 3 and column 4 and insert a word in column 3 as "AVIALABLE "
Is there a way to do this . I am trying like below
Thanks
DJ
cat $FILENAME|awk -F"\t" '{ print $1 "\t... (3 Replies)
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
... (2 Replies)
Discussion started by: YogeshG
2 Replies
LEARN ABOUT PLAN9
pr
PR(1) General Commands Manual PR(1)NAME
pr - print file
SYNOPSIS
pr [ option ... ] [ file ... ]
DESCRIPTION
Pr produces a printed listing of one or more files on its standard output. The output is separated into pages headed by a date, the name
of the file or a specified header, and the page number. With no file arguments, pr prints its standard input.
Options apply to all following files but may be reset between files:
-n Produce n-column output.
+n Begin printing with page n.
-b Balance columns on last page, in case of multi-column output.
-d Double space.
-en Set the tab stops for input text every n spaces.
-h Take the next argument as a page header (file by default).
-in Replace sequences of blanks in the output by tabs, using tab stops set every n spaces.
-f Use formfeeds to separate pages.
-ln Take the length of the page to be n lines instead of the default 66.
-m Print all files simultaneously, each in one column.
-n Number the lines of each file.
-on Offset the left margin n character positions.
-sc Separate columns by the single character c instead of aligning them with white space. A missing c is taken to be a tab.
-t Do not print the 5-line header or the 5-line trailer normally supplied for each page.
-wn For multi-column output, take the width of the page to be n characters instead of the default 72.
SOURCE
/sys/src/cmd/pr.c
SEE ALSO cat(1), lp(1)PR(1)