I would like to remove characters from column 7 so that from an input file looking like this:
>HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD
I get something like that in an output file:
... (13 Replies)
I have a large text-file with tab-delimited genetic data that looks like:
KSC112 KSC234 0 0 1 1 A G C T
I simply wan to delete the first column, but since the file has 600 000 columns, it is not possible with awk (seems to be limited at 32k columns).
Does anyone have an idea how to do this? (2 Replies)
I want to add a new column to a tab delimited text file. It will be the first column and it will just be 1's. How do I go about doing that? Thanks! (1 Reply)
Hi all,
I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such:
1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
I have a file which looks like this:
73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com
73450 articles and news developmental psychology 2006-03-30 16:22:40 2 http://www.apa.org
73450 articles and news developmental psychology 2006-03-30... (1 Reply)
I have a file having the following entries:
test1 test2 test3
11 22 33
22 44 66
99 99 44
---
I want to add a column so that the above file becomes:
test1 test2 test3 notest
11 22 33 *
22 44 66 *
99 99 44 *
---
Thanks (6 Replies)
I am fairly new to programming and trying to resolve this problem. I have the file like this.
CHROM POS REF ALT 10_sample.bam 11_sample.bam 12_sample.bam 13_sample.bam 14_sample.bam 15_sample.bam 16_sample.bam
tg93 77 T C T T T T T
tg93 79 ... (4 Replies)
Hi all ,
I have a file having 12 columns tab delimited .
I need to read this file and remove the column 3 and column 4 and insert a word in column 3 as "AVIALABLE "
Is there a way to do this . I am trying like below
Thanks
DJ
cat $FILENAME|awk -F"\t" '{ print $1 "\t... (3 Replies)
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
... (2 Replies)
Discussion started by: YogeshG
2 Replies
LEARN ABOUT DEBIAN
gbp-create-remote-repo
GBP-CREATE-REMOTE-REPO(1) git-buildpackage Manual GBP-CREATE-REMOTE-REPO(1)NAME
gbp-create-remote-repo - Create remote repositories
SYNOPSIS
gbp-create-remote-repo [ --verbose ] [ --color=[auto|on|off] ] [ --remote-url-pattern=url-pattern ] [ --remote-name=name ] [ --template-
dir=directory ] [ --remote-config=config ] [ --[no-]pristine-tar ] [ --debian-branch=branch_name ] [ --upstream-branch=branch_name ] [
--[no-]track ]
DESCRIPTION
gbp-create-remote-repo creates a repository at a remote location via ssh and pushes the local repository into it. It then sets up remote
branch tracking so you can use gbp-pull to update your repository from there.
Before performing any action on the remote location it will print the remote URL and ask for confirmation.
Note: By default the remote repositories are created in the collab-maint repository on git.debian.org.
OPTIONS --remote-url-pattern=pattern
Where to create the remote repository. The part %(pkg)s will be replaced by the package name.
--remote-name=name
What name git will use when refering to that repository, e.g. 'origin'.
--template-dir=directory
Template directory to pass to git init on the remote side. This can be used to customize the remote repository, e.g. to set up
hooks.
--remote-config=config
Name of a config file section in gbp.conf that specifies the above paramters. See [XRef to GBP.MAN.GBP.CONF] manpage for details.
--debian-branch=branch_name
The branch in the Git repository the Debian package is being developed on, default is master.
--upstream-branch=branch_name
The branch in the Git repository the upstream sources are put onto. Default is upstream.
--pristine-tar
Whether to push the pristine tar branch.
--verbose
-v verbose execution
--color=[auto|on|off]
Whether to use colored output.
--[no-]track
Whether to set up branch tracking for the debian, upstream and pristine-tar branches.
CONFIGURATION FILES
Several gbp.conf files are parsed to set defaults for the above commandline arguments. See the [XRef to GBP.MAN.GBP.CONF] manpage for
details.
SEE ALSO git-buildpackage(1), gbp-pull(1), gbp.conf(5)AUTHOR
Guido Guenther <agx@sigxcpu.org>
01 June 2012 GBP-CREATE-REMOTE-REPO(1)