I would like to remove characters from column 7 so that from an input file looking like this:
>HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD
I get something like that in an output file:
... (13 Replies)
I have a large text-file with tab-delimited genetic data that looks like:
KSC112 KSC234 0 0 1 1 A G C T
I simply wan to delete the first column, but since the file has 600 000 columns, it is not possible with awk (seems to be limited at 32k columns).
Does anyone have an idea how to do this? (2 Replies)
I want to add a new column to a tab delimited text file. It will be the first column and it will just be 1's. How do I go about doing that? Thanks! (1 Reply)
Hi all,
I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such:
1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
I have a file which looks like this:
73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com
73450 articles and news developmental psychology 2006-03-30 16:22:40 2 http://www.apa.org
73450 articles and news developmental psychology 2006-03-30... (1 Reply)
I have a file having the following entries:
test1 test2 test3
11 22 33
22 44 66
99 99 44
---
I want to add a column so that the above file becomes:
test1 test2 test3 notest
11 22 33 *
22 44 66 *
99 99 44 *
---
Thanks (6 Replies)
I am fairly new to programming and trying to resolve this problem. I have the file like this.
CHROM POS REF ALT 10_sample.bam 11_sample.bam 12_sample.bam 13_sample.bam 14_sample.bam 15_sample.bam 16_sample.bam
tg93 77 T C T T T T T
tg93 79 ... (4 Replies)
Hi all ,
I have a file having 12 columns tab delimited .
I need to read this file and remove the column 3 and column 4 and insert a word in column 3 as "AVIALABLE "
Is there a way to do this . I am trying like below
Thanks
DJ
cat $FILENAME|awk -F"\t" '{ print $1 "\t... (3 Replies)
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
... (2 Replies)
Discussion started by: YogeshG
2 Replies
LEARN ABOUT ULTRIX
paste
paste(1) General Commands Manual paste(1)Name
paste - merge file data
Syntax
paste file1 file2...
paste -dlist file1 file2...
paste -s [-dlist] file1 file2...
Description
In the first two forms, concatenates corresponding lines of the given input files file1, file2, etc. It treats each file as a column or
columns of a table and pastes them together horizontally (parallel merging).
In the last form, the command combines subsequent lines of the input file (serial merging).
In all cases, lines are glued together with the tab character, or with characters from an optionally specified list. Output is to the
standard output, so it can be used as the start of a pipe, or as a filter, if - is used in place of a file name.
Options
- Used in place of any file name, to read a line from the standard input. (There is no prompting).
-dlist Replaces characters of all but last file with nontabs characters (default tab). One or more characters immediately following -d
replace the default tab as the line concatenation character. The list is used circularly, i. e. when exhausted, it is reused. In
parallel merging (i. e. no -s option), the lines from the last file are always terminated with a new-line character, not from the
list. The list may contain the special escape sequences:
(new-line), (tab), \ (backslash), and (empty string, not a null
character). Quoting may be necessary, if characters have special meaning to the shell (for example, to get one backslash, use
-d"\\" ).
Without this option, the new-line characters of each but the last file (or last line in case of the -s option) are replaced by a
tab character. This option allows replacing the tab character by one or more alternate characters (see below).
-s Merges subsequent lines rather than one from each input file. Use tab for concatenation, unless a list is specified with -d
option. Regardless of the list, the very last character of the file is forced to be a new-line.
Examples
ls | paste -d" " -
list directory in one column
ls | paste - - - -
list directory in four columns
paste -s -d"
" file
combine pairs of lines into lines
Diagnostics
line too long
Output lines are restricted to 511 characters.
too many files
Except for -s option, no more than 12 input files may be specified.
See Alsocut(1), grep(1), pr(1)paste(1)