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Full Discussion: Grep and cat combined
Top Forums UNIX for Dummies Questions & Answers Grep and cat combined Post 302783177 by biopsy on Wednesday 20th of March 2013 05:46:11 AM
Old 03-20-2013
Grep and cat combined

Hello,
i need to search one word (snp1) from many files and copy the content of the columns of this word in new file.
example:
file 1:
Code:
SNP   BP   CHR  P
snp1  1     3     0.01
snp2  2     2     0.05
.
.

file 2:
Code:
SNP   BP   CHR  P
snp1  1     3     0.06
snp2  2     2     0.3

output file:
Code:
SNP   BP   CHR  P     P
snp1  1     3     0.01 0.06

I tried this code
Code:
ls  -t *.txt > FileList.tmp  # make a file list of all files

Code:
cat FileList.tmp | while read line
do grep snp1| awk '{ print $1 $2 }' >temp.txt 
done

is this correct?
thank you

Last edited by radoulov; 03-20-2013 at 07:05 AM.. Reason: Code tags.
 

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POE::Filter::Grep(3pm)					User Contributed Perl Documentation				    POE::Filter::Grep(3pm)

NAME
POE::Filter::Grep - select or remove items based on simple rules SYNOPSIS
#!perl use POE qw( Wheel::FollowTail Filter::Line Filter::Grep Filter::Stackable ); POE::Session->create( inline_states => { _start => sub { my $parse_input_as_lines = POE::Filter::Line->new(); my $select_sudo_log_lines = POE::Filter::Grep->new( Put => sub { 1 }, Get => sub { my $input = shift; return $input =~ /sudo[d+]/i; }, ); my $filter_stack = POE::Filter::Stackable->new( Filters => [ $parse_input_as_lines, # first on get, last on put $select_sudo_log_lines, # first on put, last on get ] ); $_[HEAP]{tailor} = POE::Wheel::FollowTail->new( Filename => "/var/log/system.log", InputEvent => "got_log_line", Filter => $filter_stack, ); }, got_log_line => sub { print "Log: $_[ARG0] "; } } ); POE::Kernel->run(); exit; DESCRIPTION
POE::Filter::Grep selects or removes items based on simple tests. It may be used to filter input, output, or both. This filter is named and modeled after Perl's built-in grep() function. POE::Filter::Grep is designed to be combined with other filters through POE::Filter::Stackable. In the "SYNOPSIS" example, a filter stack is created to parse logs as lines and remove all entries that don't pertain to a sudo process. (Or if your glass is half full, the stack only selects entries that DO mention sudo.) PUBLIC FILTER METHODS
In addition to the usual POE::Filter methods, POE::Filter::Grep also supports the following. new new() constructs a new POE::Filter::Grep object. It must either be called with a single Code parameter, or both a Put and a Get parameter. The values for Code, Put, and Get are code references that, when invoked, return true to select an item or false to reject it. A Code function will be used for both input and output, while Get and Put functions allow input and output to be filtered in different ways. The item in question will be passed as the function's sole parameter. sub reject_bidoofs { my $pokemon = shift; return 1 if $pokemon ne "bidoof"; return; } my $gotta_catch_nearly_all = POE::Filter::Grep->new( Code => &reject_bidoofs, ); Enforce read-only behavior: my $read_only = POE::Filter::Grep->new( Get => sub { 1 }, Put => sub { 0 }, ); modify modify() changes a POE::Filter::Grep object's behavior at run-time. It accepts the same parameters as new(), and it replaces the existing tests with new ones. # Don't give away our Dialgas. $gotta_catch_nearly_all->modify( Get => sub { 1 }, Put => sub { return shift() ne "dialga" }, ); SEE ALSO
POE::Filter for more information about filters in general. POE::Filter::Stackable for more details on stacking filters. BUGS
None known. AUTHORS &; COPYRIGHTS The Grep filter was contributed by Dieter Pearcey. Documentation is provided by Rocco Caputo. Please see the POE manpage for more information about authors and contributors. perl v5.14.2 2012-05-15 POE::Filter::Grep(3pm)
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