I have a file of fasta headers that looks like the following:
Code:
>gi|28476830|ref|NR_001281.1| Homo sapiens protocadherin beta 18 pseudogene (PCDHB18), non-coding RNA
>gi|187937204|ref|NR_023342.1| Homo sapiens keratin associated protein 20-4 (KRTAP20-4), non-coding RNA
>gi|221139737|ref|NR_024072.2| Homo sapiens MRS2 magnesium homeostasis factor homolog (S. cerevisiae) pseudogene 2 (MRS2P2), non-coding RNA
>gi|219881533|ref|NR_003932.2| Homo sapiens ribosomal protein L13a pseudogene 20 (RPL13AP20), non-coding RNA
>gi|93204855|ref|NR_003024.1| Homo sapiens eukaryotic translation initiation factor 3, subunit I pseudogene 1 (EIF3IP1), non-coding RNA
>gi|222831626|ref|NR_026740.1| Homo sapiens placenta-specific 9 pseudogene (LOC389033), non-coding RNA
I want to write a code to extract the string inside parantheses in each line. The difficulty is some of the lines how more than two strings inside parantheses (i.e. line 3) In such cases, I only want to extract the string inside the second paranthesis. My output should look like:
i need a shell program to extract a substring from a main string..
for eg:- main string is madhu..
sub string is mad
o/p:- be mad.
try to solve this one (5 Replies)
Hi, guys. I have one question:
I need to search for a string in a file, and then extract another string from the file and assign it to a variable.
For example:
the contents of the file (group) is below:
...
ftp:x:23:
mail:x:34
...
testing:x:2001
sales:x:2002
development:x:2003
...... (6 Replies)
hi all,
i have a file name using the following pattern:
PREFIX: AR
SOURCE: LEGACY
DATETIME: YYYYMMDD_HH24MISS
SUFFIX: .txt
sample filename:
AR_LEGACY_20101104_105500.txt
i want to extract the source which is LEGACY in this case. how do i do this using shell?
thanks. (4 Replies)
continuing from my previous post, whose link is given below as a reference
https://www.unix.com/shell-programming-scripting/171076-shell-scripting.html#post302573569
consider there is create table commands in a file for eg:
CREATE TABLE `Blahblahblah` (
`id` int(11) NOT NULL... (2 Replies)
Hi,
May i ask if someone share some command for extracting a string between 2 ref string in a txt file
My objective: i had a file with multiple lines and wants only to extract the string "watch?v=IbkAXOmEHpY" or "watch?v=<11 random character>", when i used "grep 'watch?=*' i got a results per... (4 Replies)
I have a string
string="Please have a nice day and sleep well Replace_12123_31233_32134_12342 Good day"
How do i replace "Replace_12123_31233_32134_1234" in the above string.??
Please help.
Regards,
Qwerty (3 Replies)
Need Assistance in shell programming... I have a huge file which has multiple stations and i wanted to search particular station and extract few lines from it and the rest is not needed
Bold letters are the stations . The whole file has multiple stations .
Below example i wanted to search... (4 Replies)
Hi Team
I have an huge xml where i need to search for a ceratin numbers. For example
2014-05-06 15:15:41,498 INFO WebContainer : 10 CommonServicesLogs - CleansingTriggerService.invokeCleansingService Entered PUBSUB NOTIFY MESSAGE () -
<?xml version="1.0" encoding="UTF-8"... (5 Replies)
Hello guys,
I have problem with hpux shell script. I have one big text file that contains like
SOH
bla bla bla
bla bla bla
ETX SOH
bla bla bla
ETX
SOH
bla bla bla
ETX
What I need to do is save first SOH*BLA into file1.txt, save second SOH*BLA into file2.txt and so on.... (17 Replies)
Hi All,
I want to replace the commas which are not inside parenthesis,quotes
if input is
abc,,lm,(no,pq,rs),{tu,vw,xy},zs,"as,as,fr",'ab,cd,ef'
output should be
abc lm (no,pq,rs) {tu,vw,xy} zs "as,as,fr" 'ab,cd,ef'
I tried this str.replaceAll("\\(.*?\\)|(,)", " "); say my string... (3 Replies)
Discussion started by: preethy
3 Replies
LEARN ABOUT DEBIAN
gtk2::pagesetup
Gtk2::PageSetup(3pm) User Contributed Perl Documentation Gtk2::PageSetup(3pm)NAME
Gtk2::PageSetup - wrapper for GtkPageSetup
HIERARCHY
Glib::Object
+----Gtk2::PageSetup
METHODS
pagesetup = Gtk2::PageSetup->new
pagesetup = Gtk2::PageSetup->new_from_file ($file_name)
o $file_name (localized file name)
May croak with a Glib::Error in $@ on failure.
Since: gtk+ 2.12
pagesetup = Gtk2::PageSetup->new_from_key_file ($key_file, $group_name)
o $key_file (Glib::KeyFile)
o $group_name (string or undef)
May croak with a Glib::Error in $@ on failure.
Since: gtk+ 2.12
double = $setup->get_bottom_margin ($unit)
o $unit (Gtk2::Unit)
$setup->set_bottom_margin ($margin, $unit)
o $margin (double)
o $unit (Gtk2::Unit)
double = $setup->get_left_margin ($unit)
o $unit (Gtk2::Unit)
$setup->set_left_margin ($margin, $unit)
o $margin (double)
o $unit (Gtk2::Unit)
$setup->load_file ($file_name)
o $file_name (string)
May croak with a Glib::Error in $@ on failure.
Since: gtk+ 2.14
$setup->load_key_file ($key_file, $group_name)
o $key_file (Glib::KeyFile)
o $group_name (string or undef)
May croak with a Glib::Error in $@ on failure.
Since: gtk+ 2.14
pageorientation = $setup->get_orientation
$setup->set_orientation ($orientation)
o $orientation (Gtk2::PageOrientation)
double = $setup->get_page_height ($unit)
o $unit (Gtk2::Unit)
double = $setup->get_page_width ($unit)
o $unit (Gtk2::Unit)
double = $setup->get_paper_height ($unit)
o $unit (Gtk2::Unit)
$setup->set_paper_size_and_default_margins ($size)
o $size (Gtk2::PaperSize)
papersize = $setup->get_paper_size
$setup->set_paper_size ($size)
o $size (Gtk2::PaperSize)
double = $setup->get_paper_width ($unit)
o $unit (Gtk2::Unit)
double = $setup->get_right_margin ($unit)
o $unit (Gtk2::Unit)
$setup->set_right_margin ($margin, $unit)
o $margin (double)
o $unit (Gtk2::Unit)
$setup->to_file ($file_name)
o $file_name (localized file name)
May croak with a Glib::Error in $@ on failure.
Since: gtk+ 2.12
$setup->to_key_file ($key_file, $group_name)
o $key_file (Glib::KeyFile)
o $group_name (string or undef)
Since: gtk+ 2.12
double = $setup->get_top_margin ($unit)
o $unit (Gtk2::Unit)
$setup->set_top_margin ($margin, $unit)
o $margin (double)
o $unit (Gtk2::Unit)
ENUMS AND FLAGS
enum Gtk2::PageOrientation
o 'portrait' / 'GTK_PAGE_ORIENTATION_PORTRAIT'
o 'landscape' / 'GTK_PAGE_ORIENTATION_LANDSCAPE'
o 'reverse-portrait' / 'GTK_PAGE_ORIENTATION_REVERSE_PORTRAIT'
o 'reverse-landscape' / 'GTK_PAGE_ORIENTATION_REVERSE_LANDSCAPE'
enum Gtk2::Unit
o 'pixel' / 'GTK_UNIT_PIXEL'
o 'points' / 'GTK_UNIT_POINTS'
o 'inch' / 'GTK_UNIT_INCH'
o 'mm' / 'GTK_UNIT_MM'
SEE ALSO
Gtk2, Glib::Object
COPYRIGHT
Copyright (C) 2003-2011 by the gtk2-perl team.
This software is licensed under the LGPL. See Gtk2 for a full notice.
perl v5.14.2 2012-05-27 Gtk2::PageSetup(3pm)