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Top Forums Shell Programming and Scripting Help extracting single instance of numbers which repeat Post 302773701 by crunchgargoyle on Thursday 28th of February 2013 02:39:32 PM
Old 02-28-2013
Help extracting single instance of numbers which repeat

Hi, the title isn't very descriptive but it'll be easier to explain what I need if I write out the coordinates from which I need to extract certain information:

Code:
ATOM   2521  C   MAM X  61      44.622  49.357  12.584  1.00  0.00           C
ATOM   2522  H   MAM X  61      43.644  49.102  12.205  1.00  0.00           H
ATOM   2523  C11 MAM X  61      45.498  50.039  11.772  1.00  0.00           C
ATOM   2536  C   MAM X  62      35.964  51.167  53.648  1.00  0.00           C
ATOM   2537  H   MAM X  62      36.622  51.061  52.798  1.00  0.00           H
ATOM   2538  C11 MAM X  62      36.278  52.149  54.641  1.00  0.00           C
ATOM   2551  C   MAM X  63      57.273  40.310  20.752  1.00  0.00           C
ATOM   2552  H   MAM X  63      57.185  39.814  19.797  1.00  0.00           H
ATOM   2553  C11 MAM X  63      58.520  40.106  21.426  1.00  0.00           C
ATOM   2566  C   MAM X  64      38.293  39.258   1.527  1.00  0.00           C
ATOM   2567  H   MAM X  64      37.235  39.061   1.426  1.00  0.00           H
ATOM   2568  C11 MAM X  64      38.719  40.568   1.353  1.00  0.00           C
ATOM   2581  C   MAM X  65      37.737  30.472  26.042  1.00  0.00           C
ATOM   2582  H   MAM X  65      37.065  31.282  25.801  1.00  0.00           H
ATOM   2583  C11 MAM X  65      37.283  29.302  26.675  1.00  0.00           C
ATOM   2596  C   MAM X  66      31.049  29.707   3.564  1.00  0.00           C
ATOM   2597  H   MAM X  66      31.141  30.714   3.184  1.00  0.00           H
ATOM   2598  C11 MAM X  66      29.856  29.416   4.253  1.00  0.00           C
ATOM   2611  C   MAM X  67      52.602  26.469  10.601  1.00  0.00           C
ATOM   2612  H   MAM X  67      52.385  25.997  11.548  1.00  0.00           H
ATOM   2613  C11 MAM X  67      53.918  26.586  10.166  1.00  0.00           C
ATOM   2626  C   MAM X  68      15.973  78.046  54.402  1.00  0.00           C
ATOM   2627  H   MAM X  68      15.990  78.975  53.853  1.00  0.00           H
ATOM   2628  C11 MAM X  68      14.881  77.168  54.242  1.00  0.00           C

In the 25th and 26th columns (may be some variation from copy/paste editing) there are two-digit numbers between 61 and 68 in the block I've posted above. What I need to be able to do is extract each of those numbers once only and pass each instance into separate, independent variables. Therefore given that there are 8 separate numbers (61-68) I need 8 separate variables corresponding to each.

Any help greatly appreciated. Bash or Python would be easiest for me. Many thanks.

Last edited by crunchgargoyle; 02-28-2013 at 03:41 PM.. Reason: Clarity
 

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UNIQ(1) 						    BSD General Commands Manual 						   UNIQ(1)

NAME
uniq -- report or filter out repeated lines in a file SYNOPSIS
uniq [-c | -d | -u] [-i] [-f num] [-s chars] [input_file [output_file]] DESCRIPTION
The uniq utility reads the specified input_file comparing adjacent lines, and writes a copy of each unique input line to the output_file. If input_file is a single dash ('-') or absent, the standard input is read. If output_file is absent, standard output is used for output. The second and succeeding copies of identical adjacent input lines are not written. Repeated lines in the input will not be detected if they are not adjacent, so it may be necessary to sort the files first. The following options are available: -c Precede each output line with the count of the number of times the line occurred in the input, followed by a single space. -d Only output lines that are repeated in the input. -f num Ignore the first num fields in each input line when doing comparisons. A field is a string of non-blank characters separated from adjacent fields by blanks. Field numbers are one based, i.e. the first field is field one. -s chars Ignore the first chars characters in each input line when doing comparisons. If specified in conjunction with the -f option, the first chars characters after the first num fields will be ignored. Character numbers are one based, i.e. the first character is character one. -u Only output lines that are not repeated in the input. -i Case insensitive comparison of lines. DIAGNOSTICS
The uniq utility exits 0 on success, and >0 if an error occurs. COMPATIBILITY
The historic +number and -number options have been deprecated but are still supported in this implementation. SEE ALSO
sort(1) STANDARDS
The uniq utility is expected to be IEEE Std 1003.2 (``POSIX.2'') compatible. HISTORY
A uniq command appeared in Version 3 AT&T UNIX. BSD
June 6, 1993 BSD
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