Hi all,
I need to replace automatically all special characters of one filename with some corresponding characters
For example >
ö --> oe
ä --> ae
....
If the special character comes more than one time, then all the coccuerences have to be replaced.
I would like to have a... (6 Replies)
Hello,
I have some files in a directory like:
01_07_2010_aa.txt
01_07_2010_bb.txt
01_07_2010_cc.txt
01_07_2010_dd.txt
01_07_2010_ee.txt
01_07_2010_ff.txt
I want to change their names to :
3nm_aa.txt
3nm_bb.txt
3nm_cc.txt
3nm_dd.txt
3nm_ee.txt
3nm_ff.txt (8 Replies)
Hi.. I have a seperate chromosome sequences and i wanted to parse some regions of chromosome based on start site and end site.. how can i achieve this?
For Example Chr 1 is in following format
I need regions from 2 - 10 should give me AATTCCAAA
and in a similar way 15- 25 should give... (8 Replies)
Hi is it possible to change multiple files (~10k) names with out disturbing the data in it. ?
input
Hynda|cgr10(+):100027702-1000312480|.txt
Hynda|cgr10(+):100027702-1000312483|.txt
Hynda|cgr10(+):100027702-1000312484|.txt
Hynda|cgr10(+):100027702-1000312482|.txt
output... (4 Replies)
Hi
I have an alignment file (.fasta) with ~80 sequences. They look like this-
>JV101.contig00066(+):25302-42404|sequence_index=0|block_index=4|species=JV101|JV101_4_0
GAGGTTAATTATCGATAACGTTTAATTAAAGTGTTTAGGTGTCATAATTT
TAAATGACGATTTCTCATTACCATACACCTAAATTATCATCAATCTGAAT... (2 Replies)
Hi,
How can I change following file name in a bash script?
From file names: myfile-module-1.0-3.0.el6.x86_64.package
To file names: myfile-module1_0-1.0-3.0.el6.x86_64.package
^ ^ ^ ^ ^ ^ ^ ^
Basically, the digit 1.0 is a version number, the digit 3.0 is... (11 Replies)
Hi,
I want to match the sequence id (sub-string of line starting with '>' and extract the information upto next '>' line ). Please help .
input
> fefrwefrwef X900
AGAGGGAATTGG
AGGGGCCTGGAG
GGTTCTCTTC
> fefrwefrwef X932
AGAGGGAATTGG
AGGAGGTGGAG
GGTTCTCTTC
> fefrwefrwef X937... (2 Replies)
Hello,
I have 10 fasta files with sequenced reads information with read sizes from 15 - 35 . I have combined the reads and collapsed in to unique reads and filtered for sizes 18 - 26 bp long unique reads. Now i wanted to count each unique read appearance in all the fasta files and make a table... (5 Replies)
I have a landing directory on my unix (solaris) server, that receives the following files:
MLH4301I AAOT-hhslog.610.20150805.txt
MLH4301I AAOT-hhslog.611.20150805.txt
MLH4301I AAOT-hhslog.612.20150805.txt
MLH4301I AAOT-hhslog.613.20150805.txt
and I need to add to this files the number 10000... (6 Replies)
I have to mine the following sequence pattern from a large fasta file namely gene.fasta (contains multiple fasta sequences) along with the flanking sequences of 5 bases at starting position and ending position,
AAGCZ-N16-AAGCZ
Z represents A, C or G (Except T)
N16 represents any of the four... (3 Replies)
Discussion started by: dineshkumarsrk
3 Replies
LEARN ABOUT DEBIAN
statistics::basic::mode
Statistics::Basic::Mode(3pm) User Contributed Perl Documentation Statistics::Basic::Mode(3pm)NAME
Statistics::Basic::Mode - find the mode of a list
SYNOPSIS
Invoke it this way:
my $mode = mode(1,2,3,3);
Or this way:
my $v1 = vector(1,2,3,3);
my $mod = mode($v1);
And then either query the values or print them like so:
print "The mod of $v1: $mod
";
my $mq = $mod->query;
my $m0 = 0+$mod; # this will croak occasionally, see below
The mode of an array is not necessarily a scalar. The mode of this vector is a vector:
my $mod = mode(1,2,3);
my $v2 = $mod->query;
print "hrm, there's three elements in this mode: $mod
"
if $mod->is_multimodal;
Create a 20 point "moving" mode like so:
use Statistics::Basic qw(:all nofill);
my $sth = $dbh->prepare("select col1 from data where something");
my $len = 20;
my $mod = mode()->set_size($len);
$sth->execute or die $dbh->errstr;
$sth->bind_columns( my $val ) or die $dbh->errstr;
while( $sth->fetch ) {
$mod->insert( $val );
if( defined( my $m = $mod->query ) ) {
print "Mode: $m
";
}
print "Mode: $mod
" if $mod->query_filled;
}
METHODS
new()
The constructor takes a list of values, a single array ref, or a single Statistics::Basic::Vector as arguments. It returns a
Statistics::Basic::Mode object.
Note: normally you'd use the mean() constructor, rather than building these by hand using "new()".
is_multimodal()
Statistics::Basic::Mode objects sometimes return Statistics::Basic::Vector objects instead of numbers. When "is_multimodal()" is true,
the mode is a vector, not a scalar.
_OVB::import()
This module also inherits all the overloads and methods from Statistics::Basic::_OneVectorBase.
OVERLOADS
This object is overloaded. It tries to return an appropriate string for the calculation or the value of the computation in numeric
context.
In boolean context, this object is always true (even when empty).
If evaluated as a string, Statistics::Basic::Mode will try to format a number (like any other Statistics::Basic object), but if the object
"is_multimodal()", it will instead return a Statistics::Basic::Vector for stringification.
$x = mode(1,2,3);
$y = mode(1,2,2);
print "$x, $y
"; # prints: [1, 2, 3], 2
If evaluated as a number, a Statistics::Basic::Mode will raise an error when the object "is_multimodal()".
AUTHOR
Paul Miller "<jettero@cpan.org>"
COPYRIGHT
Copyright 2012 Paul Miller -- Licensed under the LGPL
SEE ALSO perl(1), Statistics::Basic, Statistics::Basic::_OneVectorBase, Statistics::Basic::Vector
perl v5.14.2 2012-01-23 Statistics::Basic::Mode(3pm)