Hi all,
I need to replace automatically all special characters of one filename with some corresponding characters
For example >
ö --> oe
ä --> ae
....
If the special character comes more than one time, then all the coccuerences have to be replaced.
I would like to have a... (6 Replies)
Hello,
I have some files in a directory like:
01_07_2010_aa.txt
01_07_2010_bb.txt
01_07_2010_cc.txt
01_07_2010_dd.txt
01_07_2010_ee.txt
01_07_2010_ff.txt
I want to change their names to :
3nm_aa.txt
3nm_bb.txt
3nm_cc.txt
3nm_dd.txt
3nm_ee.txt
3nm_ff.txt (8 Replies)
Hi.. I have a seperate chromosome sequences and i wanted to parse some regions of chromosome based on start site and end site.. how can i achieve this?
For Example Chr 1 is in following format
I need regions from 2 - 10 should give me AATTCCAAA
and in a similar way 15- 25 should give... (8 Replies)
Hi is it possible to change multiple files (~10k) names with out disturbing the data in it. ?
input
Hynda|cgr10(+):100027702-1000312480|.txt
Hynda|cgr10(+):100027702-1000312483|.txt
Hynda|cgr10(+):100027702-1000312484|.txt
Hynda|cgr10(+):100027702-1000312482|.txt
output... (4 Replies)
Hi
I have an alignment file (.fasta) with ~80 sequences. They look like this-
>JV101.contig00066(+):25302-42404|sequence_index=0|block_index=4|species=JV101|JV101_4_0
GAGGTTAATTATCGATAACGTTTAATTAAAGTGTTTAGGTGTCATAATTT
TAAATGACGATTTCTCATTACCATACACCTAAATTATCATCAATCTGAAT... (2 Replies)
Hi,
How can I change following file name in a bash script?
From file names: myfile-module-1.0-3.0.el6.x86_64.package
To file names: myfile-module1_0-1.0-3.0.el6.x86_64.package
^ ^ ^ ^ ^ ^ ^ ^
Basically, the digit 1.0 is a version number, the digit 3.0 is... (11 Replies)
Hi,
I want to match the sequence id (sub-string of line starting with '>' and extract the information upto next '>' line ). Please help .
input
> fefrwefrwef X900
AGAGGGAATTGG
AGGGGCCTGGAG
GGTTCTCTTC
> fefrwefrwef X932
AGAGGGAATTGG
AGGAGGTGGAG
GGTTCTCTTC
> fefrwefrwef X937... (2 Replies)
Hello,
I have 10 fasta files with sequenced reads information with read sizes from 15 - 35 . I have combined the reads and collapsed in to unique reads and filtered for sizes 18 - 26 bp long unique reads. Now i wanted to count each unique read appearance in all the fasta files and make a table... (5 Replies)
I have a landing directory on my unix (solaris) server, that receives the following files:
MLH4301I AAOT-hhslog.610.20150805.txt
MLH4301I AAOT-hhslog.611.20150805.txt
MLH4301I AAOT-hhslog.612.20150805.txt
MLH4301I AAOT-hhslog.613.20150805.txt
and I need to add to this files the number 10000... (6 Replies)
I have to mine the following sequence pattern from a large fasta file namely gene.fasta (contains multiple fasta sequences) along with the flanking sequences of 5 bases at starting position and ending position,
AAGCZ-N16-AAGCZ
Z represents A, C or G (Except T)
N16 represents any of the four... (3 Replies)
Discussion started by: dineshkumarsrk
3 Replies
LEARN ABOUT PHP
xslt_set_scheme_handlers
XSLT_SET_SCHEME_HANDLERS(3) 1 XSLT_SET_SCHEME_HANDLERS(3)xslt_set_scheme_handlers - Set the scheme handlers for theXSLTprocessorSYNOPSIS
void xslt_set_scheme_handlers (resource $xh, array $handlers)
DESCRIPTION
Registers the scheme handlers (XPath handlers) for the document.
PARAMETERS
o $
xh -The XSLT processor link identifier, created with xslt_create(3).
o $handlers
- An array with the following keys: "get_all", "open", "get", "put", and "close". Every entry must be a function name or an array
in the following format: array($obj, "method"). Note that the given array does not need to contain all of the different scheme
handler elements (although it can), but it only needs to conform to the "handler" => "function" format described above. Each of
the individual scheme handler functions called are in the formats below:
string get_all(resource processor, string scheme, string rest)
resource open(resource processor, string scheme, string rest)
int get(resource processor, resource fp, string &data)
int put(resource processor, resource fp, string data)
void close(resource processor, resource fp)
RETURN VALUES
No value is returned.
EXAMPLES
Example #1
xslt_set_scheme_handlers(3) example
For example, here is an implementation of the "file_exists()" PHP function.
<?php
// Definition of the handler
function mySchemeHandler($processor, $scheme, $rest)
{
$rest = substr($rest,1); // to remove the first / automatically added by the engine
if ($scheme == 'file_exists') {
// result is embedded in a small xml string
return '<?xml version="1.0" encoding="UTF-8"?><root>' . (file_exists($rest) ? 'true' : 'false') . '</root>';
}
}
$SchemeHandlerArray = array('get_all' => 'mySchemeHandler');
// Start the engine
$params = array();
$xh = xslt_create();
xslt_set_scheme_handlers($xh, $SchemeHandlerArray);
$result = xslt_process($xh, "myFile.xml", "myFile.xsl", NULL, array(), $params);
xslt_free($xh);
echo $result;
?>
Then, inside the stylesheet, you can test whether a certain file exists with:
<xsl:if test="document('file_exists:anotherXMLfile.xml')/root='true'">
<!-- The file exist -->
</xsl:if>
SEE ALSO xslt_set_scheme_handler(3).
PHP Documentation Group XSLT_SET_SCHEME_HANDLERS(3)