02-27-2013
Quote:
Originally Posted by
sonia102
I used :
"delete from tablename
where seq_id = 'seq2'
i deleted all the other sequences.
and after that
delete from tablename
where stop_id>=1000000 ;
i dont know how to reduce the original file size
its 300mb and i want to retain the first 100mb .
could some1 suggest?
---------- Post updated 02-26-13 at 07:59 PM ---------- Previous update was 02-25-13 at 09:54 PM ----------
hi
is there any command to count the number of bits in a file ?
Anything that i can use to retain the first 1000 or 100mb bits in a file and delte the remaining?
Count the bytes and multiply by 8.
Seriously - I'd propose you learn some basics on databases.
Deleting anything from the outside will corrupt the database rendering it totally unusable.
Deleting sequences does not really save space - they are just metadata worth a few bytes, counters that have a start and end value, and e.g. a step width, all recorded in the DB management structures.
Retaining the "first" 100 MB (= deleting 200 MB above) is pointless as consistent data are spread all over tablespaces/files.
Do as cero proposed - create a new datafile/tablespace, move all relevant data there, and then drop the old structures. Or, seriously consider recreating.
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LEARN ABOUT DEBIAN
globus-gram-audit
GLOBUS-GRAM-AUDIT(8) GRAM5 Commands GLOBUS-GRAM-AUDIT(8)
NAME
globus-gram-audit - Load GRAM4 and GRAM5 audit records into a database
SYNOPSIS
globus-gram-audit [--conf CONFIG_FILE] [[--create] | [--update=OLD-VERSION]] [--check] [--delete] [--audit-directory AUDITDIR] [--quiet]
DESCRIPTION
The globus-gram-audit program loads audit records to an SQL-based database. It reads $GLOBUS_LOCATION/etc/globus-job-manager.conf by
default to determine the audit directory and then uploads all files in that directory that contain valid audit records to the database
configured by the globus_gram_job_manager_auditing_setup_scripts package. If the upload completes successfully, the audit files will be
removed.
The full set of command-line options to globus-gram-audit consist of:
--conf CONFIG_FILE
Use CONFIG_FILE instead of the default from the
configuration file for audit database
configuration.
--check
Check whether the insertion of a record was
successful by querying the database after
inserting the records. This is used in tests.
--delete Delete audit records from the database right
after inserting them. This is used in tests to
avoid filling the databse with test records.
--audit-directory DIR Look for audit records in DIR, instead of looking
in the directory specified in the job manager
configuration. This is used in tests to control
which records are loaded to the database and then
deleted.
--query SQL Perform the given SQL query on the audit
database. This uses the database information from
the configuration file to determine how to
contact the database.
--quiet Reduce the amount of output for common
operations.
FILES
The globus-gram-audit uses the following files (paths relative to $GLOBUS_LOCATION.
etc/globus-gram-job-manager.conf
GRAM5 job manager configuration. It includes the
default path to the audit directory
etc/globus-gram-audit.conf
Audit configuration. It includes the information
needed to contact the audit database.
University of Chicago 08/30/2011 GLOBUS-GRAM-AUDIT(8)