I am trying to think of a way to create user ids on multiple Linux systems in one fell swoop without logging onto each system indivually. Is there a way to do this with ssh commands? I don't want to use NIS/LDAP solution just a simple shell script utilitarian methodoloy would suffice. Also, I am... (1 Reply)
I've had Linux when I was young, on one of our first computers and learned it pretty quickly... However, I've been working on Windows for about 7 years now and just made the switch back to Linux, Mandrake 9.1. So I have some problem with creating new user accounts. I could create one, but once I... (3 Replies)
I am trying get "df -k" output from multiple hosts along with their hostnames via ssh, my script is appending the "df -k" output from all the nodes to a single file but not getting the hostnames for those nodes, just wondering how to pass more than one command via ssh or may be someone could come... (6 Replies)
I have a directory full of zip files.
How would I write a bash script to enumerate all the zip files, remove the ".zip" from the file name, create a directory by that name and unzip each zip file into its corresponding directory?
Thanks!
Siegfried (3 Replies)
Hi,
Can someone help me with creating a bash shell script.
I need to create a script that gets a positive number n as an argument.
The script must create n directories in the current directory with names like map_1, map_2 etcetera. Each directory must be contained within its predecessor. So... (7 Replies)
Hi
I need to create a user who can have access on only one folder.
for example I created a user "test" . he should have access only on folder
/testfolder.
The problem is that the user will mostly use FileZilla to ftp his files in the testfolder.
In the fileZilla , i want him to be... (21 Replies)
I have a script on about 15 hosts that I need to run for each host whenever I want (not crontab). Problem is, this script takes 5-10 mins to run for each host. Is there a way I can run the script in parallel for all the hosts instead of 1 at a time? Also, I'm remotely running the script on the... (3 Replies)
I have a script to detect if a host is pingable or not. The problem is that I would like it to put the nonpingable hosts in one file and the pingable hosts in another. I have come up with this so far:
for ip in `cat /tmp/testlist2`; do ping -c 3 $ip >/dev/null && echo "$ip is up" || echo "$ip... (5 Replies)
Hi everyone!
Some time ago, I had to check connectivity with a big list of hosts, using different formats (protocol://server:port/path/, server:port, ....).
I developed a script that checks the connectivity using different commands (ping, telnet, nc, curl).
It worked for me so I'm sharing it... (9 Replies)
Discussion started by: Fr3dY
9 Replies
LEARN ABOUT DEBIAN
cd-hit-para
CD-HIT-PARA.PL(1) User Commands CD-HIT-PARA.PL(1)NAME
cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs
SYNOPSIS
cd-hit-para.pl options
DESCRIPTION
This script divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel. After
all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.
You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).
Requirements:
1 When run this script over a network, the directory where you
run the scripts and the input files must be available on all the remote hosts with identical path.
2 If you choose "ssh" to submit jobs, you have to have
passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.
3 I suggest to use queuing system instead of ssh,
I currently support PBS and SGE
4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d
cd-hit-div cd-hit-div.pl must be in same directory where this script is in.
Options
-i input filename in fasta format, required
-o output filename, required
--P program, "cd-hit" or "cd-hit-est", default "cd-hit"
--B filename of list of hosts,
requred unless -Q or -L option is supplied
--L number of cpus on local computer, default 0
when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
just use "--L 1" unless you have enough RAM for each cpu
--S Number of segments to split input DB into, default 64
--Q number of jobs to submit to queue queuing system, default 0
by default, the program use ssh mode to submit remote jobs
--T type of queuing system, "PBS", "SGE" are supported, default PBS
--R restart file, used after a crash of run
-h print this help
More cd-hit/cd-hit-est options can be speicified in command line
Questions, bugs, contact Weizhong Li at liwz@sdsc.edu
cd-hit-para.pl 4.6-2012-04-25 April 2012 CD-HIT-PARA.PL(1)