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Special Forums UNIX and Linux Applications High Performance Computing FFTW - ./configure --enable-mpi error. Post 302771057 by abhi34101 on Tuesday 19th of February 2013 12:55:33 PM
Old 02-19-2013
FFTW - ./configure --enable-mpi error.

Hello
I am trying to install fftw3.3.3 on an HPC system. The system has openmpi installed ( though we can choose between a variety of mpi distributions). However, while ./configure step of fftw, there is an error. The relevant section of the output is:
Code:
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for ocamlbuild... no
checking for mpicc... mpicc
checking for MPI_Init... no
checking for MPI_Init in -lmpi... no
checking for MPI_Init in -lmpich... no
configure: error: could not find mpi library for --enable-mpi

The command i used was:
Code:
./configure --enable-float --enable-shared --enable-mpi --enable-threads --enable-sse2

I also installed mpich2 in my home folder and provided its path through MPICC variable (shown below) but i got the same error as above.
Code:
./configure --enable-sse2 --enable-mpi --enable-threads --enable-float MPICC=/home/aacharya/mpich-install/bin

Kindly help as i'm stuck with this.

Last edited by Scott; 02-19-2013 at 07:17 PM.. Reason: Code tags
 

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FFTW-WISDOM-TO-CONF(1)						       fftw						    FFTW-WISDOM-TO-CONF(1)

NAME
fftw-wisdom-to-conf - generate FFTW wisdom (pre-planned transforms) SYNOPSIS
fftw-wisdom-to-conf [< INPUT] [> OUTPUT] DESCRIPTION
fftw-wisdom-to-conf is a utility to generate C configuration routines from FFTW wisdom files, where the latter contain saved information about how to optimally compute (Fourier) transforms of various sizes. A configuration routine is a C subroutine that you link into your program, replacing a routine of the same name in the FFTW library, that determines which parts of FFTW are callable by your program. The reason to do this is that, if you only need transforms of a limited set of sizes and types, and if you are statically linking your pro- gram, then using a configuration file generated from wisdom for those types can substantially reduce the size of your executable. (Other- wise, because of FFTW's dynamic nature, all of FFTW's transform code must be linked into any program using FFTW.) FFTW is a free library to compute discrete Fourier transforms in one or more dimensions, for arbitrary sizes, and of both real and complex data, among other related operations. More information on FFTW can be found at the FFTW home page: http://www.fftw.org fftw-wisdom-to-conf reads wisdom from standard input and writes the configuration to standard output. It can easily be combined with the fftw-wisdom tool, for example: fftw-wisdom -n cof1024 cob1024 -o wisdom fftw-wisdom-to-conf < wisdom > conf.c will create a configuration "conf.c" containing only those parts of FFTW needed for the optimized complex forwards and backwards out-of- place transforms of size 1024 (also saving the wisdom itself in "wisdom"). Alternatively, you can run your actual program, export wisdom for all plans that were created (ideally in FFTW_PATIENT or FFTW_EXHAUSTIVE mode), use this as input for fftw-wisdom-to-conf, and then re-link your program with the resulting configuration routine. Note that the configuration routine does not contain the wisdom, only the routines necessary to implement the wisdom, so your program should also import the wisdom in order to benefit from the pre-optimized plans. OPTIONS
-h, --help Display help on the command-line options and usage. -V, --version Print the version number and copyright information. BUGS
Send bug reports to fftw@fftw.org. AUTHORS
Written by Steven G. Johnson and Matteo Frigo. Copyright (c) 2003, 2007-11 Matteo Frigo Copyright (c) 2003, 2007-11 Massachusetts Institute of Technology SEE ALSO
fftw-wisdom(1) fftw February, 2003 FFTW-WISDOM-TO-CONF(1)
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