02-11-2013
Grep for a range of numbers?
I am trying to extract specific information from a large *.sam file (it's originally 28Gb).
I want to extract all lines that are on chr3 somewhere in the range of 112,937,439-113,437,438.
Here is a sample line from my file so you can get a feel for what each line looks like:
seq.4 0 chr10 82951725 25 50M * 0 0 GCCACTTCATTATTTTGGGGACTATCTCCCTAGTCATCACAAGAAATTAA bbbeeeeegggggiiiiiiiihiiiiihiiihighiiihiiiihhiehii XO:A:F MD:Z:50 NM:i:0 IH:i:1 HI:i:1
Any suggestions?
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LEARN ABOUT DEBIAN
pdfseparate
pdfseparate(1) General Commands Manual pdfseparate(1)
NAME
pdfseparate - Portable Document Format (PDF) page extractor
SYNOPSIS
pdfseparate [options] PDF-file PDF-page-pattern
DESCRIPTION
pdfseparate extract single pages from a Portable Document Format (PDF).
pdfseparate reads the PDF file PDF-file, extracts one or more pages, and writes one PDF file for each page to PDF-page-pattern, PDF-page-
pattern should contain %d
The PDF-file should not be encrypted.
OPTIONS
-f number
Specifies the first page to extract. If -f is omitted, extraction starts with page 1.
-l number
Specifies the last page to extract. if -p is omitted, extraction ends with the last page.
-v Print copyright and version information.
-h Print usage information. (-help and --help are equivalent.)
EXAMPLE
pdfseparate sample.pdf sample-%d.pdf
extracts all pages from sample.pdf, if i.e. sample.pdf has 3 pages, it produces
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AUTHOR
The pdfseparate software and documentation are copyright 1996-2004 Glyph & Cog, LLC and copyright 2005-2011 The Poppler Developers -
http://poppler.freedesktop.org
SEE ALSO
pdfunite(1),
15 September 2011 pdfseparate(1)