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Top Forums Shell Programming and Scripting Counting characters at each position Post 302768215 by RudiC on Friday 8th of February 2013 06:50:42 AM
Old 02-08-2013
Try this as a starting point:
Code:
$ awk -F "" '     {for ( i=1; i<=NF;  i++) {freq[$i,i]++; Base[$i]} if (NF > max) max = NF}
             END  {for ( i=1; i<=max; i++)
                    {for (a in Base) print "Pos: ", i, ", Base: ", a, ", Freq: ", freq[a,i]}}
            ' file
Pos:  1 , Base:  A , Freq:  1
Pos:  1 , Base:  C , Freq:  1
Pos:  1 , Base:  G , Freq:  2
Pos:  1 , Base:  N , Freq:  
Pos:  1 , Base:  T , Freq:  2
Pos:  2 , Base:  A , Freq:  1
Pos:  2 , Base:  C , Freq:  2
Pos:  2 , Base:  G , Freq:  
Pos:  2 , Base:  N , Freq:  
Pos:  2 , Base:  T , Freq:  3
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aha(1)								 Ansi HTML Adapter							    aha(1)

NAME
aha - Ansi HTML Adapter SYNOPSIS
aha [options] [-f datei] DESCRIPTION
aha takes SGR-colored Input and prints W3C conform HTML-Code. aha reads the Input from a file or stdin and writes HTML-Code to stdout. OPTIONS
--help , -h , -? A help like this --black , -b Black Background and white "standard color" --pink , -p Pink Background --iso X , -i X Uses ISO 8859-X instead of utf-8. X must be 1..16 --title X , -t X Gives the html output the title --line-fix , -l Uses a fix for inputs using control sequences to change the cursor position like htop. It's a hot fix, it may not work with any pro- gram like htop. (See EXAMPLE) EXAMPLE
aha --help | aha --black --title "the awesome aha help"> aha-help.htm Creates an HTML file with the help of aha with black background colordiff oldfile.c newfile.c | aha > colordiff.htm Creates an HTML file with a colorful diff-output of two files "oldfile.c" and "newfile.c" with white background ls --color=always | aha --pink > ls.htm Creates an HTML file with a colorful ls-output with pink background. echo a | htop | aha --black --line-fix > htop.htm Creates an HTML file with the output of htop. You have to use --line-fix due the other new-line-commands htop uses. AUTHOR
Copyleft Alexander Matthes aka Ziz 2011 zizsdl@googlemail.com SEE ALSO
http://ziz.delphigl.com/tool_aha.php August 31, 2011 aha(1)
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