I have two files:
One is a list of numbers:
1
5
6
7
10
The second is a very long string
abcdefghijklmno......1234567890
I'd like to print a new file with a 5 character substring that starts at each the positions listed in the 1st file:
such as:
abcde (4 Replies)
hi
i need to name a file with a substring of a another file name.
i.e. if the old filename is abc.txt , the new filename should be abc_1.txt
i should get the substring of the file name and then name the new one
please let me know how to do it (4 Replies)
Hi,
I have a folder list as below, I want to write a script to return a list like:
CASTLE_BU_20080801
CAUSEWAY_BU_20080801
HUNGHOM_BU_20080801
:
:
Can anyone help?
Thanks!
Victor Cheung
List of the folder:
# ls
CASTLE_BU_20080801.DMP OFFICE_MY1_BU_20080801.DMP... (1 Reply)
I'm new to shell scripting and am trying to write a small script that pulls a substring out of a file that has a few lines of text in it. The file will eventually have a lot of text, I just put a few lines in it for testing purposes.
Anyway, this is what I have so far...
#!/bin/ksh
... (4 Replies)
Hi,
I have a file with a long string, in the format:
name1=value,name2=value2.....namen=valuen
I want to query the file and extract 'value2' ONLY. name2=value2 can exist anywhere within the file.
Can anyone help me please wth a suitable BASH command?
Many thanks,
Matt (4 Replies)
Hi,
In my shell script. I am reading all files in directory.
And say if the file names are as follows:
adio_idfl_201302_df.txt
dfa_201301_dll.ctl
dalkd_20130301.csv
I would like to extract the numeric piece of each file name and display as follows:
201302
201301
20130301
I... (9 Replies)
Hello,
I have in my backup folder, files with names convention like this :
randomFileNames_13-02-2014_23h13m09+1392333189
randomFileNames_14-02-2014_02h13m09+1392343989
randomFileNames_14-02-2014_04h13m09+1392351189
etc....
Base on timestamp at end of the filename, I would to delete all the... (7 Replies)
Hello,
A question please.
A have a file that contains a string. Ex:
AAAABBCCCCCDDEEEEEEEEEEFF
I'd want to recover 2 substrings, 'BB' and 'FF' and then leave them in a new file.
Could anoyone help me please?
Thanks in advance (3 Replies)
Hello,
A question please.
A have a file that contains a string. Ex:
AAAABBCCCCCDDEEEEEEEEEEFF
I'd want to recover 2 substrings, 'BB' and 'FF' and then leave them in a new file.
From position 5, 2 caracters (ex:"BB") and from position 25, 2 caracters (ex:"FF") in a file.
Could anoyone help me... (3 Replies)
I want to merge the lines by matching substring of the first file with first column of the second file.
file1:
S00739A_ACAGTG_L001_R1.fq.gz
S00739A_ACAGTG_L001_R2.fq.gz
S00739B_GCCAAT_L001_R1.fq.gz
S00739B_GCCAAT_L001_R2.fq.gz
S00739D_GTGAAA_L001_R1.fq.gz
S00739D_GTGAAA_L001_R2.fq.gz... (14 Replies)
Discussion started by: yifangt
14 Replies
LEARN ABOUT DEBIAN
clmclose
clm close(1) USER COMMANDS clm close(1)
NAME
clm close - Fetch connected components from graphs or subgraphs
clmclose is not in actual fact a program. This manual page documents the behaviour and options of the clm program when invoked in mode
close. The options -h, --apropos, --version, -set, --nop are accessible in all clm modes. They are described in the clm manual page.
SYNOPSIS
clm close -imx <fname> [options]
clm close -imx fname (specify matrix input) -abc fname (specify label input) -dom fname (input domain/cluster file) [-o fname (output file)]
[--is-undirected (trust input graph to be undirected)] [--write-count (output component count)] [--write-sizes (output component sizes
(default))] [--write-cc (output components as clustering)] [--write-block (output graph restricted to -dom argument)] [--write-blockc (out-
put graph complement of -dom argument)] [-cc-bound num (select components with size at least num)] [-tf spec (apply tf-spec to input
matrix)] [-h (print synopsis, exit)] [--apropos (print synopsis, exit)] [--version (print version, exit)]
DESCRIPTION
Use clm close to fetch the connected components from a graph. Different output modes are supported (see below). In matrix mode (i.e. using
the -imx option) the output returned with --write-cc can be used in conjunction with mcxsubs to retrieve individual subgraphs corresponding
to connected components.
OPTIONS
-abc <fname> (label input)
The file name for input that is in label format.
-imx <fname> (input matrix)
The file name for input that is in mcl native matrix format.
-o fname (output file)
Specify the file where output is sent to. The default is STDOUT.
-dom fname (input domain/cluster file)
If this option is used, clm close will, as a first step, for each of the domains in file fname retrieve the associated subgraph from the
input graph. These are then further decomposed into connected components, and the program will process these in the normal manner.
--write-count (output component count)
--write-sizes (output component sizes (default))
--write-cc (output components as clustering)
--write-block (output graph restricted to -dom argument)
--write-blockc (output graph complement of -dom argument)
The default behaviour is currently to output the sizes of the connected components. It is also possible to simply output the number of
components with --write-count or to write the components as a clustering in mcl format with -write-cc. Even more options exist: it is pos-
sible to output the restriction of the input graph to a domain, or to output the complement of this restriction.
--is-undirected (omit graph undirected check)
With this option the transformation to make sure that the input is undirected is omitted. This will be slightly faster. Using this option
while the input is directed may lead to erronenous results.
-cc-bound num (select components with size at least num)
Transform the input matrix values according to the syntax described in mcxio(5).
AUTHOR
Stijn van Dongen.
SEE ALSO
mclfamily(7) for an overview of all the documentation and the utilities in the mcl family.
clm close 12-068 8 Mar 2012 clm close(1)