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Top Forums Shell Programming and Scripting Displaying log file pattern output in tabular form output Post 302763135 by Optimus81 on Tuesday 29th of January 2013 03:17:48 PM
Old 01-29-2013
Displaying log file pattern output in tabular form output

Hi All,
I have result log file which looks like this (below): from the content need to consolidate the result and put it in tabular form
Code:
1). Intercomponents Checking
Passed: All Server are passed.
======================================================================
2). OS version Checking
Passed: All Server are passed.
======================================================================
3). Component registered and running check
Failed:VerifyComponent:D01A : Some Component Not RUNNING. ATS 0/1 :
Failed:VerifyComponent:C01A : Some Component Not RUNNING. MTD 0/1 :
======================================================================
4). Verify Server Connection, for ATS/MTD/IDT components
Failed:ConnectionCheck:D01A : Gateway fail to connect to SAS server!
Failed:ConnectionCheck:B01A : Gateway fail to connect to SCAD server: u-!
Failed:ConnectionCheck:A01A : Gateway fail to connect to CSEH server
======================================================================
5). Verify Service Availability, for Z2ZS or ZDS/ZDZ or IDX/MDX or ALRX
Failed:VerifyServiceAvailability:D01A: Service IDD is NOT up.
Failed:VerifyServiceAvailability:D01A: Service DD is NOT up.
======================================================================
6). Verify Component Resiliency
Failed:VerifyResiliency:SH01: Service IDD(45002): Only HH07A(274) provide the service IDD. Please check HH07B(275)
Failed:VerifyResiliency:BH01: Service EL: No service provided.
======================================================================
7). Verify RMCmon component
Passed: All Server are passed.
======================================================================
8). Checking the Core file
Failed:ddFileGenerated:CD01A : 1 : 1485297 Jan 7 11:11

i tried to use some grep command to print the output file content in tabular form
Code:
grep '^[0-9]).' outputfilename
grep -A 1 -B 1 '^[0-9]).' outputfilename // this command didn't work since it's not GNU version

tabluar form should look like :
Code:
|========================================|
| Consolidated Report Status |
|========================================|
|SI No CHECKS STATUS |
|========================================|
|1)Intercomponents Checking : Passed |
|----------------------------------------------------|
|2)OS version Checking : Passed |
|----------------------------------------------------|
|3)Component registered : Failed |
|----------------------------------------------------|
|4)Verify Server Connection : Failed |
|----------------------------------------------------|
|5)Verify Service Availability : Failed |
|----------------------------------------------------|
|6)Verify Component Resiliency : Failed |
|----------------------------------------------------|
|7)Verify RMCmon component : Passed |
|----------------------------------------------------|
|8)Checking the Core file : Failed |
|========================================|
| Total Passed : 2 |
| Total Failed : 5 |
| Total executed: 7 |
|========================================|

 

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BP_SEARCH2TRIBE(1p)					User Contributed Perl Documentation				       BP_SEARCH2TRIBE(1p)

NAME
search2tribe - Turn SearchIO parseable reports(s) into TRIBE matrix SYNOPSIS
Usage: search2tribe [-o outputfile] [-f reportformat] [-w/--weight] file1 file2 .. DESCRIPTION
This script is probably too slow for most people's uses. It is better to use something like scripts/searchio/fastam9_to_table, -m 9 output from BLAST, or the blast2table from the BLAST O'Reilly book to get a tabular output from these programs and then feed the table into MCL with the mcxdeblast script and the --m9 option. This script will turn a protein Search report (BLASTP, FASTP, SSEARCH) into a Markov Matrix for TribeMCL clustering. The options are: -o filename - the output filename [default STDOUT] -f format - search result format (blast, fasta) (ssearch is fasta format). default is blast. -w or --weight VALUE - Change the default weight for E(0.0) hits to VALUE (default=200 (i.e. 1e-200) ) -h - this help menu Additionally specify the filenames you want to process on the command-line. If no files are specified then STDIN input is assumed. You specify this by doing: search2tribe < file1 file2 file3 AUTHOR
Jason Stajich, jason-at-bioperl-dot-org perl v5.14.2 2012-03-02 BP_SEARCH2TRIBE(1p)
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