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Top Forums Shell Programming and Scripting Find duplicates in column 1 and merge their lines (awk?) Post 302762419 by falcox on Monday 28th of January 2013 11:58:23 AM
Old 01-28-2013
Find duplicates in column 1 and merge their lines (awk?)

Hi,

I have a file (sorted by sort) with 8 tab delimited columns. The first column contains duplicated fields and I need to merge all these identical lines.

My input file:
Code:
comp100002	aaa	bbb	ccc	ddd	eee	fff	ggg
comp100003	aba	aba	aba	aba	aba	aba	aba
comp100003	fff	fff	fff	fff	fff	fff	fff
comp100004	xxx	xyz	xyz	xxx	xyz	xxx	xyz

My desired output file:

Code:
comp100002	aaa	bbb	ccc	ddd	eee	fff	ggg
comp100003	aba	aba	aba	aba	aba	aba	aba	fff	fff	fff	fff	fff	fff	fff
comp100004	xxx	xyz	xyz	xxx	xyz	xxx	xyz

Thanks for advice.
 

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PCRECOMPAT(3)						     Library Functions Manual						     PCRECOMPAT(3)

NAME
PCRE - Perl-compatible regular expressions DIFFERENCES BETWEEN PCRE AND PERL
This document describes the differences in the ways that PCRE and Perl handle regular expressions. The differences described here are mainly with respect to Perl 5.8, though PCRE versions 7.0 and later contain some features that are expected to be in the forthcoming Perl 5.10. 1. PCRE has only a subset of Perl's UTF-8 and Unicode support. Details of what it does have are given in the section on UTF-8 support in the main pcre page. 2. PCRE does not allow repeat quantifiers on lookahead assertions. Perl permits them, but they do not mean what you might think. For exam- ple, (?!a){3} does not assert that the next three characters are not "a". It just asserts that the next character is not "a" three times. 3. Capturing subpatterns that occur inside negative lookahead assertions are counted, but their entries in the offsets vector are never set. Perl sets its numerical variables from any such patterns that are matched before the assertion fails to match something (thereby suc- ceeding), but only if the negative lookahead assertion contains just one branch. 4. Though binary zero characters are supported in the subject string, they are not allowed in a pattern string because it is passed as a normal C string, terminated by zero. The escape sequence can be used in the pattern to represent a binary zero. 5. The following Perl escape sequences are not supported: l, u, L, U, and N. In fact these are implemented by Perl's general string- handling and are not part of its pattern matching engine. If any of these are encountered by PCRE, an error is generated. 6. The Perl escape sequences p, P, and X are supported only if PCRE is built with Unicode character property support. The properties that can be tested with p and P are limited to the general category properties such as Lu and Nd, script names such as Greek or Han, and the derived properties Any and L&. 7. PCRE does support the Q...E escape for quoting substrings. Characters in between are treated as literals. This is slightly different from Perl in that $ and @ are also handled as literals inside the quotes. In Perl, they cause variable interpolation (but of course PCRE does not have variables). Note the following examples: Pattern PCRE matches Perl matches Qabc$xyzE abc$xyz abc followed by the contents of $xyz Qabc$xyzE abc$xyz abc$xyz QabcE$QxyzE abc$xyz abc$xyz The Q...E sequence is recognized both inside and outside character classes. 8. Fairly obviously, PCRE does not support the (?{code}) and (??{code}) constructions. However, there is support for recursive patterns. This is not available in Perl 5.8, but will be in Perl 5.10. Also, the PCRE "callout" feature allows an external function to be called dur- ing pattern matching. See the pcrecallout documentation for details. 9. Subpatterns that are called recursively or as "subroutines" are always treated as atomic groups in PCRE. This is like Python, but unlike Perl. 10. There are some differences that are concerned with the settings of captured strings when part of a pattern is repeated. For example, matching "aba" against the pattern /^(a(b)?)+$/ in Perl leaves $2 unset, but in PCRE it is set to "b". 11. PCRE does support Perl 5.10's backtracking verbs (*ACCEPT), (*FAIL), (*F), (*COMMIT), (*PRUNE), (*SKIP), and (*THEN), but only in the forms without an argument. PCRE does not support (*MARK). If (*ACCEPT) is within capturing parentheses, PCRE does not set that capture group; this is different to Perl. 12. PCRE provides some extensions to the Perl regular expression facilities. Perl 5.10 will include new features that are not in earlier versions, some of which (such as named parentheses) have been in PCRE for some time. This list is with respect to Perl 5.10: (a) Although lookbehind assertions must match fixed length strings, each alternative branch of a lookbehind assertion can match a different length of string. Perl requires them all to have the same length. (b) If PCRE_DOLLAR_ENDONLY is set and PCRE_MULTILINE is not set, the $ meta-character matches only at the very end of the string. (c) If PCRE_EXTRA is set, a backslash followed by a letter with no special meaning is faulted. Otherwise, like Perl, the backslash is qui- etly ignored. (Perl can be made to issue a warning.) (d) If PCRE_UNGREEDY is set, the greediness of the repetition quantifiers is inverted, that is, by default they are not greedy, but if fol- lowed by a question mark they are. (e) PCRE_ANCHORED can be used at matching time to force a pattern to be tried only at the first matching position in the subject string. (f) The PCRE_NOTBOL, PCRE_NOTEOL, PCRE_NOTEMPTY, and PCRE_NO_AUTO_CAPTURE options for pcre_exec() have no Perl equivalents. (g) The R escape sequence can be restricted to match only CR, LF, or CRLF by the PCRE_BSR_ANYCRLF option. (h) The callout facility is PCRE-specific. (i) The partial matching facility is PCRE-specific. (j) Patterns compiled by PCRE can be saved and re-used at a later time, even on different hosts that have the other endianness. (k) The alternative matching function (pcre_dfa_exec()) matches in a different way and is not Perl-compatible. (l) PCRE recognizes some special sequences such as (*CR) at the start of a pattern that set overall options that cannot be changed within the pattern. AUTHOR
Philip Hazel University Computing Service Cambridge CB2 3QH, England. REVISION
Last updated: 11 September 2007 Copyright (c) 1997-2007 University of Cambridge. PCRECOMPAT(3)
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