Hi all,
Happy new year!
Here I have a problem with extract specific information from each line in unix:
My file is the dbSNP flat file, take two SNPs for examples:
I want to extract the: "alleles=XXX" and "allele=XX" for each SNP, can anyone help on this?
To make things difficulty:
1) not for every SNP, it has both. Some SNPs don't have "allele=XX" but only "alleles=XXX"
2) the "XXX" here are not just A,T,G,C, but sometimes "-".
thanks!
Last edited by Corona688; 01-01-2013 at 05:24 PM..
Hi
I want to extract certain text between two line numbers like
23234234324 and
54446655567567
How do I do this with a simple sed or awk command?
Thank you.
---------- Post updated at 06:16 PM ---------- Previous update was at 05:55 PM ----------
found it:
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ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC
ASDSFDFFDFDFFWERERERERFSDFESFSFD
>sequence_2
ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD
ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS
>sequence_3
VEDFGSDGSDGSDGSDGSDGSDGSDG
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