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Top Forums Shell Programming and Scripting Urgent!! Post 302747979 by jyotirmoy21 on Monday 24th of December 2012 03:36:01 AM
Old 12-24-2012
Ubuntu Urgent!!

Hi
I have a file containing
DE 3'UTR in Homo sapiens alpha-1-B glycoprotein (A1BG), mRNA.
SQ Sequence 216 BP; 37 A; 58 C; 69 G; 52 T; 0 other;
DE 3'UTR in Homo sapiens alpha-1-B glycoprotein (A1BG), mRNA.
SQ Sequence 1844 BP; 358 A; 483 C; 434 G; 569 T; 0 other;
DE 3'UTR in Homo sapiens alpha-1-B glycoprotein (A1BG), mRNA.
SQ Sequence 172 BP; 31 A; 47 C; 54 G; 40 T; 0 other;
DE 3'UTR in Homo sapiens APOBEC1 complementation factor (A1CF), transcript
DE variant 1, mRNA.
SQ Sequence 164 BP; 73 A; 27 C; 18 G; 46 T; 0 other;
...
...
...
From this file I wanna get an output as:
A1BG 216
A1BG 1844
A1BG 172
A1CF 164
....
...
....
this file contains 522254 lines.
How will I get this output in linux?
Please anyone...help me to get this output.
Thank you for your kind attention!!
 

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ximtoppm(1)                                                   General Commands Manual                                                  ximtoppm(1)

NAME
ximtoppm - convert an Xim file into a portable pixmap SYNOPSIS
ximtoppm [--alphaout={alpha-filename,-}] [ximfile] DESCRIPTION
Reads an Xim file as input. Produces a portable pixmap as output. The Xim toolkit is included in the contrib tree of the X.V11R4 release. OPTIONS
--alphaout=alpha-filename ximtoppm creates a PGM (portable graymap) file containing the alpha channel values in the input image. If the input image doesn't contain an alpha channel, the alpha-filename file contains all zero (transparent) alpha values. If you don't specify --alphaout, ximtoppm does not generate an alpha file, and if the input image has an alpha channel, ximtoppm simply discards it. If you specify - as the filename, ximtoppm writes the alpha output to Standard Output and discards the image. Actually, an Xim image can contain an arbitrary fourth channel -- it need not be an Alpha channel. ximtoppm extracts any fourth channel it finds as described above; it doesn't matter if it is an alpha channel or not. See pnmcomp(1) for one way to use the alpha output file. All options can be abbreviated to their shortest unique prefix. SEE ALSO
pnmcomp(1), ppm(5) AUTHOR
Copyright (C) 1991 by Jef Poskanzer. April 2, 2000 ximtoppm(1)
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