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Top Forums Shell Programming and Scripting Doing a loop to change a value in a file Post 302740619 by lost.identity on Thursday 6th of December 2012 12:10:40 PM
Old 12-06-2012
Doing a loop to change a value in a file

Hi, I have an N number of files in a directory. I like to write a shell script that would make identical plots for each one of these files.

The files have names such as:
Code:
t00001.dat
t00002.dat  
t00003.dat  
t00004.dat  
t00005.dat
       .
       .
       .
t00040.dat

i.e. the filename is incrementing numerically from a value of 1 to N.

I plot some variables from these files using gnuplot. So in my gnuplot plotting script (plot.gplt) I have the following line which plots the function:

Code:
plot 't00001.dat' using 1:2

I know that using a perl script I could change the filename 't00001.dat' incrementally. But with my limited knowledge in shell scripting I don't know how to do this.

Thanks!
 

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UNKNOWN(1)						      General Commands Manual							UNKNOWN(1)

NAME
unknown - identify possible genotypes for unknowns SYNOPSIS
A program to rapidly identify which genotypes are possible for individuals typed as unknowns in the input pedigree. unknown [ -cl ] DESCRIPTION
unknown infers possible genotypes and mating combinations for parents with unknown genotypes for ilink(1), mlink(1) and linkmap(1). OPTIONS
-c Use conditional allele frequencies. -l Choose a good set of loop breakers automatically. RETURN VALUE
0 Successful completion ERRORS
10 File not found 255 Failure EXAMPLES
Normally, unknown(1) is run immediately prior to its sister programs, ilink(1), mlink(1) and linkmap(1), like this: unknown mlink FILES
unknown(1) reads the two files pedfile.dat and datafile.dat as its own input and produces various temporary files that are used as input to the next program. These temporary files are ipedfile.dat, upedfile.dat, speedfile.dat and newspeedfile.dat. NOTES
unknown(1) is part of the FASTLINK package, which is a re-implementation of the LINKAGE suite of computer tools that help investigate genetic linkage as first proposed G.M. Lathrop, J.M. Lalouel, C. Julier, and J. Ott. AUTHORS
Dylan Cooper, Alejandro Schaffer, and Tony Schurtz based on work originally by Jurg Ott, Ph.D, et. al. This manual page was written by Elizabeth Barham <lizzy@soggytrousers.net> for the Debian GNU/Linux system (but may be used by others). WORD-WIDE-WEB http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html SEE ALSO
ilink(1), linkmap(1), lodscore(1), mlink(1). April 15, 2003 UNKNOWN(1)
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