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Top Forums Shell Programming and Scripting Find matches and write the data before it Post 302728645 by Priyanka Chopra on Thursday 8th of November 2012 08:16:05 AM
Old 11-08-2012
Hi

It seems some error

Finally I am attaching both BD(first) 1diseasedrug(second) files and output file(see)

Pleas check it

these are just part as the files are big and I also got one error
Code:
bash-3.2$ awk 'NR==FNR{X[$1]=$0;next}{n=split($1,P," ");sub($1,"",$0);for(i=1;i<=n;i++){if(X[P[i]]){print P[i],$0}}}' BD FS="  +" diseasedrugbank >see
awk: (FILENAME=diseasedrugbank FNR=471) fatal: Unmatched ( or \(: /DRD2 ADRA1A  Droperidol      DHBP    DRD2 ADRA1A     The exact mechanism of action is unknown, however, droperidol causes a CNS depression at subcortical levels of the brain, midbrain, and brainstem reticular formation. It may antagonize the actions of glutamic acid within the extrapyramidal system. It may also inhibit cathecolamine receptors and the reuptake of neurotransmiters and has strong central antidopaminergic action and weak central anticholinergic action. It can also produce ganglionic blockade and reduced affective response. The main actions seem to stem from its potent Dopamine(2) receptor antagonism with minor antagonistic effects on alpha-1 adrenergic receptors as well.      A butyrophenone with general properties similar to those of haloperidol. It is used in conjunction with an opioid analgesic such as fentanyl to maintain the patient in a calm state of neuroleptanalgesia with indifference to surroundings but still able to cooperate with the surgeon. It is also used as a premedicant, as an antiemetic, and for the control of agitation in acute psychoses. (From Martindale, The Extra/
bash-3.2$

so output is not as expected in these files
 

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queue-repair(8) 					      System Manager's Manual						   queue-repair(8)

NAME
queue-repair - deal with the qmail queue directory structure SYNOPSIS
queue-repair [ -htrcbn ] [ -n split ] [ conf-qmail ] DESCRIPTION
queue-repair deals with the qmail queue structure; it can create a new queue, move and properly rename a queue, dynamically change the conf-split value, convert big-todo queues to non-big-todo and vice versa, and repair a corrupted queue. conf-qmail defaults to /var/lib/qmail/ on Debian. OPTIONS
-h|--help Display usage information and built-in defaults, then exit. -t|--test Run in test-only mode. queue-repair will attempt to report all problems that it finds, without correcting them. This is the default. -r|--repair Run in repair mode. queue-repair will attempt to correct all problems that it finds, except if the basic queue directories (queue, queue/mess, queue/info, etc) are not found. -c|--create Run in create-and-repair mode. queue-repair will attempt to correct all problems that it finds, including creation of a new queue structure from scratch. -s|--split split Specify split as the value of conf-split. This is the number of split subdirectories for those queue directories which are hashed. The default for qmail is 23. Appropriate values depend on the volume of mail handled, OS filesystem efficiency, and other factors, but this should always be a prime number. If you do not specify conf-split, queue-repair will attempt to determine the current value from the existing queue. This option can be used, however, to change the conf-split value of an existing queue (qmail will still have to be recompiled with the new value). When creating a new queue, this option must always be specified. -b|--bigtoto Use big-todo. queue-repair should be able to automatically determine if you're using qmail patched with the big-todo patch. This option can be used, however, to convert a non-big-todo queue to a big-todo queue (qmail will still have to be recompiled with the big-todo patch). If neither this option nor --no-bigtodo is used, queue-repair will attempt to determine this automatically. When creating a new queue, either this option or --no-bigtodo must always be specified. -n|--no-bigtodo Do not use big-todo. queue-repair should be able to automatically determine if you're using qmail patched with the big-todo patch. This option can be used, however, to convert a big-todo queue to a non big-todo queue (qmail will still have to be recompiled with- out the big-todo patch). If neither this option nor --bigtodo is used, queue-repair will attempt to determine this automatically. When creating a new queue, either this option or --bigtodo must always be specified. --i-want-a-broken-conf-split Force the use of a non-prime value for conf-split. SEE ALSO
qmail(7) queue-repair(8)
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