I want to submit my awk script into cluster queue as my job takes about forty minutes to finish so I can not run it on the main node.
My awk script is like the following and I have three files. so, I write :
qsub -q short.q Myscript.awk file1 file2 file3
It submits the work into cluster but it gives an error after some seconds.
Thank you very much for yout help
I have several HP/UX nodes running Sendmail 8.13 ...some work fine, some don't.
When an Email is coming in, the 'DATA' command never ends. The other side of the connection gets to the point where it enters the '.' on a line by itself, but sendmail doesn't accept it...if fact it keeps on holding... (8 Replies)
I already have a solution to my problem, but I'm looking to see if it can be made more succinct and faster. The problem: given a list, as shown below, extract the pathname for any file in a directory named 'ample' and return it's index into the list. The index is also in the data itself. Note that... (1 Reply)
Can anyone point me to the right direction on how to write a simple script that will display a message on any terminal when implemented?
Basically I need it so the script runs at a certain time, say April 30, 2010 and that the message will be displayed to me no matter which terminal I am logged... (2 Replies)
Hi,
I have a csh:
set NODES = `cat $HOST_FILE`
set NODELIST = $TMPDIR/namd2.nodelist
echo group main >! $NODELIST
foreach node ( $NODES )
echo host $node >> $NODELIST
end
@ NUMPROCS = 2 * $#NODES
I am very frustrated to translate it to bash:
NODES = `cat... (3 Replies)
I need to put a small delay into a shell script. I'm looking for something smaller than "sleep" - a second is way too long. I want to sleep something like 10 milliseconds. I've tried "usleep" and "nanosleep", but the script doesn't recognize them.
I'm using the bash shell but I'm willing to... (9 Replies)
Hi
I am new to submitting jobs. I am trying to submit my perl file to the cluster.
This is what my shell file looks like (shell1.sh):
#!/bin/sh
#$ -S /bin/sh
cd data/projects/mydir/abbc
perl autocorro.pl
followed by qsub shell1.sh
It takes the qsub, but does nothing. I check... (1 Reply)
I have installed my flash application using shell script. I have created short cut to desktop. Now i want to change the default short cut Icon. Please tell me script to change the short cut icon.
---------- Post updated at 12:54 AM ---------- Previous update was at 12:33 AM ----------
Working... (0 Replies)
I have a file like this:
FileName,Well,Sample Description,Size ,Calibrated Conc. ,Assigned Conc. ,Peak Molarity ,Area,% Integrated Area,Peak Comment,Observations
2017-11-15 - 13.49.50.D1000,EL1,Electronic Ladder,25,5.22,,321,0.803,,,Lower Marker
2017-11-15 - 13.49.50.D1000,EL1,Electronic... (6 Replies)
Discussion started by: Xterra
6 Replies
LEARN ABOUT V7
diff3
DIFF3(1) General Commands Manual DIFF3(1)NAME
diff3 - 3-way differential file comparison
SYNOPSIS
diff3 [ -ex3 ] file1 file2 file3
DESCRIPTION
Diff3 compares three versions of a file, and publishes disagreeing ranges of text flagged with these codes:
==== all three files differ
====1 file1 is different
====2 file2 is different
====3 file3 is different
The type of change suffered in converting a given range of a given file to some other is indicated in one of these ways:
f : n1 a Text is to be appended after line number n1 in file f, where f = 1, 2, or 3.
f : n1 , n2 c Text is to be changed in the range line n1 to line n2. If n1 = n2, the range may be abbreviated to n1.
The original contents of the range follows immediately after a c indication. When the contents of two files are identical, the contents of
the lower-numbered file is suppressed.
Under the -e option, diff3 publishes a script for the editor ed that will incorporate into file1 all changes between file2 and file3, i.e.
the changes that normally would be flagged ==== and ====3. Option -x (-3) produces a script to incorporate only changes flagged ====
(====3). The following command will apply the resulting script to `file1'.
(cat script; echo '1,$p') | ed - file1
FILES
/tmp/d3?????
/usr/lib/diff3
SEE ALSO diff(1)BUGS
Text lines that consist of a single `.' will defeat -e.
Files longer than 64K bytes won't work.
DIFF3(1)