11-03-2012
10 More Discussions You Might Find Interesting
1. Programming
Just getting into the Unix command line programming and am unable to run any program I write. I am using a Makefile and the source is compiling but when I enter the name of the output file I get back:
bash: lab01exe.out: command not found
I'm sure I am just dooing something simple... (2 Replies)
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2. Shell Programming and Scripting
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well, i have only been learning about linux, unix and shells for a few days.
For my online game to work, i need run a file each 10 seconds. Running that file will update mysql data, causing my online game to "tick". This adds resources and fights battles in game.
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6. Programming
Hello!
I just programmed a very simple app, it's function is to report every minute the state of the memory and cpu and put it to and xml.
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7. UNIX for Dummies Questions & Answers
Lets get some stuff out of the way before the question. I am currently running FreeBSD 7.0 on a VirtualBox virtual machine. I do not know much about Unix or FreeBSD, though I do run linux at home. My boss gave me some files that he says are a unix version of the program Dynflow. The Programs... (0 Replies)
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8. UNIX for Dummies Questions & Answers
Hey All,
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9. Shell Programming and Scripting
Folks,
I'm really new to scripting and was wondering if you could help me out. I have the following script that I inherited:
#!/bin/bash
#
# Usage
# From the agent directory:
# ./run-any-agent AgentName
#
TAC_AGENT_HOME=`pwd`
LIB=${TAC_AGENT_HOME}/lib
CLASSPATH=.... (17 Replies)
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10. Shell Programming and Scripting
I have a program which I can run on the command line like below and works fine
/nethome/chrisd/HSeis/TommyCD/TommyCD-1101/bin/raytrac vmod=npt10-z30.vmod srfile=jcdint.sc rcfile=jcdint.rc phases="SP FS" level=twop format="X T" dtau=0.1 mdacc=0.5 mindist=0.1 maxitertp=25 ray=npt10-z30.ry... (0 Replies)
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LEARN ABOUT DEBIAN
cd-hit-2d-para
CD-HIT-2D-PARA.PL(1) User Commands CD-HIT-2D-PARA.PL(1)
NAME
cd-hit-2d-para.pl - divide a big clustering job into pieces to run cd-hit-2d or cd-hit-est-2d jobs
SYNOPSIS
cd-hit-2d-para.pl options
DESCRIPTION
This script divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel. After
all the jobs finished, the script merge the clustering results as if you just run a single cd-hit-2d or cd-hit-est-2d.
You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).
Requirements:
1 When run this script over a network, the directory where you
run the scripts and the input files must be available on all the remote hosts with identical path.
2 If you choose "ssh" to submit jobs, you have to have
passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.
3 I suggest to use queuing system instead of ssh,
I currently support PBS and SGE
4 cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-div.pl must be
in same directory where this script is in.
Options
-i input filename for 1st db in fasta format, required
-i2 input filename for 2nd db in fasta format, required
-o output filename, required
--P program, "cd-hit-2d" or "cd-hit-est-2d", default "cd-hit-2d"
--B filename of list of hosts, requred unless -Q or -L option is supplied
--L number of cpus on local computer, default 0 when you are not running it over a cluster, you can use this option to divide a big
clustering jobs into small pieces, I suggest you just use "--L 1" unless you have enough RAM for each cpu
--S Number of segments to split 1st db into, default 2
--S2 Number of segments to split 2nd db into, default 8
--Q number of jobs to submit to queue queuing system, default 0 by default, the program use ssh mode to submit remote jobs
--T type of queuing system, "PBS", "SGE" are supported, default PBS
--R restart file, used after a crash of run
-h print this help
More cd-hit-2d/cd-hit-est-2d options can be speicified in command line
Questions, bugs, contact Weizhong Li at liwz@sdsc.edu
cd-hit-2d-para.pl 4.6-2012-04-25 April 2012 CD-HIT-2D-PARA.PL(1)