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Top Forums Shell Programming and Scripting Count and merge using common column Post 302725183 by Chubler_XL on Thursday 1st of November 2012 07:53:38 PM
Old 11-01-2012
@pamu your solution requires that input file is sorted, the solution I posted didn't assume this, mostly because empyrean's posted code required sort:

Code:
cat file | awk '$3 ~/A|T|G|C/{print $0}'| sort | uniq -c

This User Gave Thanks to Chubler_XL For This Post:
 

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Perl::Critic::Policy::Subroutines::ProhibitReturnSort(3)User Contributed Perl DocumentatioPerl::Critic::Policy::Subroutines::ProhibitReturnSort(3)

NAME
Perl::Critic::Policy::Subroutines::ProhibitReturnSort - Behavior of "sort" is not defined if called in scalar context. AFFILIATION
This Policy is part of the core Perl::Critic distribution. DESCRIPTION
The behavior of the builtin "sort" function is not defined if called in scalar context. So if you write a subroutine that directly "return"s the result of a "sort" operation, then you code will behave unpredictably if someone calls your subroutine in a scalar context. This Policy emits a violation if the "return" keyword is directly followed by the "sort" function. To safely return a sorted list of values from a subroutine, you should assign the sorted values to a temporary variable first. For example: sub frobulate { return sort @list; # not ok! @sorted_list = sort @list; return @sort # ok } KNOWN BUGS
This Policy is not sensitive to the "wantarray" function. So the following code would generate a false violation: sub frobulate { if (wantarray) { return sort @list; } else{ return join @list; } } CONFIGURATION
This Policy is not configurable except for the standard options. CREDITS
This Policy was suggested by Ulrich Wisser and the <http://iis.se> team. AUTHOR
Jeffrey Ryan Thalhammer <jeff@imaginative-software.com> COPYRIGHT
Copyright (c) 2005-2011 Imaginative Software Systems. All rights reserved. This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself. The full text of this license can be found in the LICENSE file included with this module. perl v5.16.3 2014-06-09 Perl::Critic::Policy::Subroutines::ProhibitReturnSort(3)
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