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Full Discussion: Count and merge using common column
Top Forums Shell Programming and Scripting Count and merge using common column Post 302724621 by pamu on Thursday 1st of November 2012 03:12:31 AM
Old 11-01-2012
Quote:
Originally Posted by empyrean
Code:
 
      3  2,1    415     A       G/T
      5  3,2    421     G       A/A,C
      2         427     A       C

I assume if second column is count of occurrences. then third row should contain 2 in second column.

This is lit bit nasty code..Smilie

Code:
awk 'function prnt() {
    split(A[S],ARR);
    n=split(ARR[3],ARR_2,"/");
    if(n>1){for(i=1;i<=n;i++){
    var=var?var","UN[ARR[1],ARR[2],ARR_2[i]]:UN[ARR[1],ARR[2],ARR_2[i]]}}
    print CN[S],var,A[S];var=""
    }
    {if($3 != "."){CN[$1]++;if(!UN[$1,$2,$3]++){A[$1]=A[$1]?A[$1]"/"$3:$0;}
    if(S != $1 && S){prnt()}
    {P=$0;S=$1}}}END{prnt()}' OFS="\t" file

This User Gave Thanks to pamu For This Post:
empyrean
 

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LEARN ABOUT DEBIAN

locale::language

Locale::Language(3perl) 				 Perl Programmers Reference Guide				   Locale::Language(3perl)

NAME

       Locale::Language - standard codes for language identification

SYNOPSIS

	  use Locale::Language;

	  $lang = code2language('en');	      # $lang gets 'English'
	  $code = language2code('French');    # $code gets 'fr'

	  @codes   = all_language_codes();
	  @names   = all_language_names();

DESCRIPTION

       The "Locale::Language" module provides access to standard codes used for identifying languages, such as those as defined in ISO 639.

       Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 639 two-
       letter codes will be used.

SUPPORTED CODE SETS

       There are several different code sets you can use for identifying languages. The ones currently supported are:

       alpha-2
	   This is the set of two-letter (lowercase) codes from ISO 639, such as 'he' for Hebrew.

	   This code set is identified with the symbol "LOCALE_LANG_ALPHA_2".

	   This is the default code set.

       alpha-3
	   This is the set of three-letter (lowercase) bibliographic codes from ISO 639, such as 'heb' for Hebrew.

	   This code set is identified with the symbol "LOCALE_LANG_ALPHA_3".

       term
	   This is the set of three-letter (lowercase) terminologic codes from ISO 639.

	   This code set is identified with the symbol "LOCALE_LANG_TERM".

ROUTINES

       code2language ( CODE [,CODESET] )
       language2code ( NAME [,CODESET] )
       language_code2code ( CODE ,CODESET ,CODESET2 )
       all_language_codes ( [CODESET] )
       all_language_names ( [CODESET] )
       Locale::Language::rename_language  ( CODE ,NEW_NAME [,CODESET] )
       Locale::Language::add_language  ( CODE ,NAME [,CODESET] )
       Locale::Language::delete_language  ( CODE [,CODESET] )
       Locale::Language::add_language_alias  ( NAME ,NEW_NAME )
       Locale::Language::delete_language_alias	( NAME )
       Locale::Language::rename_language_code  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Language::add_language_code_alias  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Language::delete_language_code_alias  ( CODE [,CODESET] )
	   These routines are all documented in the Locale::Codes man page.

SEE ALSO

       Locale::Codes
       Locale::Constants
       http://www.loc.gov/standards/iso639-2/
	   Source of the ISO 639 codes.

AUTHOR

       See Locale::Codes for full author history.

       Currently maintained by Sullivan Beck (sbeck@cpan.org).

COPYRIGHT

	  Copyright (c) 1997-2001 Canon Research Centre Europe (CRE).
	  Copyright (c) 2001-2010 Neil Bowers
	  Copyright (c) 2010-2011 Sullivan Beck

       This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

perl v5.14.2							    2011-09-26						   Locale::Language(3perl)
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