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Top Forums Shell Programming and Scripting Read column and find differences... Post 302723267 by empyrean on Monday 29th of October 2012 07:25:53 PM
Old 10-29-2012
Read column and find differences...

I have this file

Code:
427	A	C	A/C	12
436	G	C	G/C	12
445	C	T	C/T	12
447	A	G	A/G	9
451	T	C	T/C	5
456	A	G	A/G	12
493	G	A	G/A	12


I wanted to read the first column and find all other ids which are differences less than 10.
Code:
427	A	C	A/C	12	436
436	G	C	G/C	12	427,445
445	C	T	C/T	12	436,447,451
447	A	G	A/G	9	445,451,456
451	T	C	T/C	5	445,447,456
456	A	G	A/G	12	451,447
493	G	A	G/A	12

The last column should be like the above. All id's which are + or - 10 bases apart from that specific id. For example for 436, the boundaries are {426 - 446} other id's which are in that range are 427 and 445 so i displayed them in 6th column..
 

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NAMAZU(1)							  Namazu Project							 NAMAZU(1)

NAME
namazu - a search program of Namazu SYNOPSIS
namazu [options] <query> [index]... DESCRIPTION
namazu 2.0.21, a search program of Namazu. -n, --max=NUM set the number of documents shown to NUM. -w, --whence=NUM set the first number of documents shown to NUM. -l, --list print the results by listing the format. -s, --short print the results in a short format. --result=EXT set NMZ.result.EXT for printing the results. --late sort the documents in late order. --early sort the documents in early order. --sort=METHOD set a sort METHOD (score, date, field:name) --ascending sort in ascending order (default: descending) -a, --all print all results. -c, --count print only the number of hits. -h, --html print in HTML format. -r, --no-references do not display the reference hit counts. -H, --page print the links of further results. (This is nearly meaningless) -F, --form force to print the <form> ... </form> region. -R, --no-replace do not replace the URI string. -U, --no-decode-uri do not decode the URI when printing in a plain format. -o, --output=FILE set the output file name to FILE. -f, --config=FILE set the config file name to FILE. -C, --show-config print the current configuration. -q, --quiet do not display extra messages except search results. -d, --debug be in debug mode. -v, --version show the namazu version and exit. --help show this help and exit. --norc do not read the personal initialization files. -- Terminate option list. REPORTING BUGS
Report bugs to <http://www.namazu.org/trac-namazu/trac.cgi> or <bug-namazu@namazu.org>. COPYRIGHT
Copyright (C) 1997-1999 Satoru Takabayashi All rights reserved. Copyright (C) 2000-2009 Namazu Project All rights reserved. This is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MER- CHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. namazu of Namazu 2.0.21 July 2011 NAMAZU(1)
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