It works.Yeah of course - it had to be something ridiculous like that. Just like when I had an sftp script starting with:
And godforbid I didn't put the corresponding EOL in the right location otherwise it was treated as a comment. I'm sure there's a reason for these things but wow...
Hello,
Can you explain why in the first 2 commands the awk does not print anything? Is it looking of a specific format ?
Thanks.
$ echo 12a3 | awk '($1>=2) {print $1}' # prints nothing
$ echo 123a | awk '($1>=2) {print $1}' # prints nothing
$ echo a123 | awk '($1>=2) {print $1}'
a123... (1 Reply)
I do not know how to do this unless I use a bunch of if statements. I need a script to replace numbers in each record in a file. I am really getting tangled in this web.
If a fieldA (19 positions) is greater than 14 digits, I have to change the data (resulting fieldA is fixed 19 postions).
If... (5 Replies)
Hi Everyone,
# cat 1
1;2;3;4;5;6
1;2;3;4;5;
# awk -F ";" '$5 == "5"' 1
1;2;3;4;5;6
1;2;3;4;5;
but the output is should be just "1;2;3;4;5;6" means 1st condition: $5 is 5; 2nd condition: $6 is not empty, please advice. Thanks (2 Replies)
Hi there,
I wanna define a variable 'tempbase'. Therefore I read a text file "base.out". "base.out" contains a list with four columns. 'tempbase' is the 4th entry in the line, where the first entry is equal to the predefined variable $orb1 and the second entry is equal to $orb2. I wrote the code... (2 Replies)
Hi there, here is my command
ssh host.local "/path/to/my/perscript/hostconfig.pl -s $HOST -d |awk '{if (\$4 > 120)print \"My error message\";exit}{s=0; for (i=1; i<=NF; i++) s++; if(s == 13) print \$3}'"
The problem is if conditional 1 is met (i.e $4 > 120), i don't see "My error message", the... (5 Replies)
Hi All,
I have a file with below contents.
"en2"/10.185.81.0:cluster_interconnect,"en5"/10.185.81.0:cluster_interconnect,"en6"/169.181.146.0:public
I want to take the interface name from the file and convert it as ipaddress using ifconfig command get the output like below
en6 ->... (2 Replies)
Hello Friends,
I need to find some CDRs in production servers whose 1st field value and 2nd field value = 1 and 11th looks like 45.123... where there are more than 3 digits after comma.so i wrote a one liner, something like below but does not work, however when i used first and second conditions... (8 Replies)
hello gurus,
I want to use an associative array from a file to populate a field of another file, by matching several columns in order of priority. If the first column matches, then i dont want to match $2. Similarly I only want to match $3 when $1 and $2 are not in associative array.
For the... (6 Replies)
Discussion started by: ritakadm
6 Replies
LEARN ABOUT DEBIAN
bio::treeio::svggraph
Bio::TreeIO::svggraph(3pm) User Contributed Perl Documentation Bio::TreeIO::svggraph(3pm)NAME
Bio::TreeIO::svggraph - A simple output format that converts a Tree object to an SVG output
SYNOPSIS
use Bio::TreeIO;
my $in = Bio::TreeIO->new(-file => 'input', -format => 'newick');
my $out = Bio::TreeIO->new(-file => '>output', -format => 'svggraph');
while( my $tree = $in->next_tree ) {
my $svg_xml = $out->write_tree($tree);
}
DESCRIPTION
This outputs a tree as an SVG graphic using the SVG::Graph API
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Brian OConnor
Email brian.oconnor-at-excite.com
CONTRIBUTORS
Allen Day Guillaume Rousse, Guillaume-dot-Rousse-at-inria-dot-fr
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::TreeIO::svggraph->new();
Function: Builds a new Bio::TreeIO::svggraph object
Returns : Bio::TreeIO::svggraph
Args :-width => image width (default 1600)
-height => image height (default 1000)
-margin => margin (default 30)
-stroke => stroke color (default 'black')
-stroke_width=> stroke width (default 2)
-font_size=> font size (default '10px')
-nomalize => undef or 'log' (default is undef)
write_tree
Title : write_tree
Usage : $treeio->write_tree($tree);
Function: Write a tree out to data stream in newick/phylip format
Returns : none
Args : Bio::Tree::TreeI object
decorateRoot
Title : _decorateRoot
Usage : internal methods
Function:
Example :
Returns :
Args :
next_tree
Title : next_tree
Usage :
Function: Sorry not possible with this format
Returns : none
Args : none
perl v5.14.2 2012-03-02 Bio::TreeIO::svggraph(3pm)