Sponsored Content
Top Forums Shell Programming and Scripting Pipe awk's output to sed for deletion Post 302719541 by jacobs.smith on Monday 22nd of October 2012 03:36:07 PM
Old 10-22-2012
Quote:
Originally Posted by vgersh99
The OP needs to reverse the original awk logic - the implementation is left as an exercise.
Hi vgersh99,

But, how do I feed the awk's output to sed? It is giving me the following error when I pipe to
Code:
sed '/d'

Code:
sed: -e expression #1, char 3: missing command

and then I used -e and still it gives the same error.

---------- Post updated at 03:36 PM ---------- Previous update was at 03:24 PM ----------

Okay. Thanks for the suggestions.

I now understood what needs to be done.

So, what I did was this

Code:
awk '{if($2=="chr1" && $3>=456 && $3<=999) {print $0}}' OFS="\t" input > intermediate_input

Code:
join -v1 -v2 input intermediate_input > final_input

But, there is a small glitch here. I am missing the immediate next line after the last line in intermediate_input.

Which means, instead of

Code:
jjj chr1 777
jhk chr7 914

I am seeing

Code:
jhk chr7 914

Any thoughts?

Alos, please suggest a pointer to keep the input file and the final_input file's pattern or separators to be the same. They changed completely after running the above command.
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

pipe output of grep to sed?

Is there a way I can do this: search for text and replace line containing matched text with a different line? For example: "I want to replace text" I want to search for replace and then change the line to I am perplexed. Hope that makes sense. Thanks in advance. (4 Replies)
Discussion started by: arsh
4 Replies

2. Shell Programming and Scripting

pipe'ing grep output to awk

This script is supposed to find out if tomcat is running or not. #!/bin/sh if netstat -a | grep `grep ${1}: /tomcat/bases | awk -F: '{print $3}'` > /dev/null then echo Tomcat for $1 running else echo Tomcat for $1 NOT running fi the /tomcat/bases is a file that... (2 Replies)
Discussion started by: ziggy25
2 Replies

3. Shell Programming and Scripting

help with sed or awk with less pipe

<tr><th align=right valign=top>Faulty_Part</th><td align=left valign=top>readhat version 6.0</td></tr> <tr><th align=right valign=top>Submit_Date</th><td align=left valign=top>2011-04-28 02:08:02</td></tr> .......(a long string) I want to get all the field between "left valign=top>" and "... (2 Replies)
Discussion started by: yanglei_fage
2 Replies

4. UNIX for Dummies Questions & Answers

Use awk to pipe output from one file into multiple files

Hi All. Thanks for your help in advance. I have a requirement to examine the number of delimiters in each record of a file. If the record has the expected number of delimiters it should be passed into a 'good' file. If it does not, the record should be passed into a 'bad' file. I have been able... (8 Replies)
Discussion started by: codestar1
8 Replies

5. UNIX for Dummies Questions & Answers

sed - combination of line deletion and pattern matching

I want to delete all the blank lines from a file before a certain line number. e.g. Input file (n: denotes line number) 1: a 2: 3: b 4: c 5: 6: d I want to delete all blank lines before line number 3, such that my output is: a b c d I see that sed '/^$/d' in_file works... (9 Replies)
Discussion started by: jawsnnn
9 Replies

6. Shell Programming and Scripting

Use less pipe for grep or awk sed to print the line not include xx yy zz

cat file |grep -v "xx" | grep -v "yy" |grep -v "zz" (3 Replies)
Discussion started by: yanglei_fage
3 Replies

7. Shell Programming and Scripting

Problem with output awk and sed

I have file, i am extracting email address from file. but problem is that output is very ugly. I am using this command REMOVED "CSS OFFENDING CODE"... While original filename have no such character. Please suggest. (20 Replies)
Discussion started by: learnbash
20 Replies

8. Shell Programming and Scripting

Insert a value in a pipe delimited line (unsig sed,awk)

Hi, I want to insert a value (x) in the 3rd position of each line in a file like below a|b|c|d|1 a|b|c|d a|b|c|d|e|1 a|b|cso that output file looks like a|b|x|c|d|1 a|b|x|c|d a|b|x|c|d|e|1 a|b|x|cI can do that using perl as below #!/usr/bin/perl -w use strict; #inserting x at... (5 Replies)
Discussion started by: sam05121988
5 Replies

9. Shell Programming and Scripting

sed command to replace a line in a file using line number from the output of a pipe.

Sed command to replace a line in a file using line number from the output of a pipe. Is it possible to replace a whole line piped from someother command into a file at paritcular line... here is some basic execution flow.. the line number is 412 lineNo=412 Now i have a line... (1 Reply)
Discussion started by: vivek d r
1 Replies

10. Shell Programming and Scripting

Pipe or combine output of three awk commands

What is the correct syntax to pipe or run three awk commands? Basically, using the output of the first awk as input in the second. Then using the output of the second awk in the third. Thank you :). awk 'FNR==NR {E; next }$3 in E {print $3, $5}' panel_genes.txt RefSeqGene.txt > update.txt |... (3 Replies)
Discussion started by: cmccabe
3 Replies
Locale::Codes::LangExt(3pm)				 Perl Programmers Reference Guide			       Locale::Codes::LangExt(3pm)

NAME
Locale::Codes::LangExt - standard codes for language extension identification SYNOPSIS
use Locale::Codes::LangExt; $lext = code2langext('acm'); # $lext gets 'Mesopotamian Arabic' $code = langext2code('Mesopotamian Arabic'); # $code gets 'acm' @codes = all_langext_codes(); @names = all_langext_names(); DESCRIPTION
The "Locale::Codes::LangExt" module provides access to standard codes used for identifying language extensions, such as those as defined in the IANA language registry. Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default IANA language registry codes will be used. SUPPORTED CODE SETS
There are several different code sets you can use for identifying language extensions. A code set may be specified using either a name, or a constant that is automatically exported by this module. For example, the two are equivalent: $lext = code2langext('acm','alpha'); $lext = code2langext('acm',LOCALE_LANGEXT_ALPHA); The codesets currently supported are: alpha This is the set of three-letter (lowercase) codes from the IANA language registry, such as 'acm' for Mesopotamian Arabic. This is the default code set. ROUTINES
code2langext ( CODE [,CODESET] ) langext2code ( NAME [,CODESET] ) langext_code2code ( CODE ,CODESET ,CODESET2 ) all_langext_codes ( [CODESET] ) all_langext_names ( [CODESET] ) Locale::Codes::LangExt::rename_langext ( CODE ,NEW_NAME [,CODESET] ) Locale::Codes::LangExt::add_langext ( CODE ,NAME [,CODESET] ) Locale::Codes::LangExt::delete_langext ( CODE [,CODESET] ) Locale::Codes::LangExt::add_langext_alias ( NAME ,NEW_NAME ) Locale::Codes::LangExt::delete_langext_alias ( NAME ) Locale::Codes::LangExt::rename_langext_code ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangExt::add_langext_code_alias ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangExt::delete_langext_code_alias ( CODE [,CODESET] ) These routines are all documented in the Locale::Codes::API man page. SEE ALSO
Locale::Codes The Locale-Codes distribution. Locale::Codes::API The list of functions supported by this module. http://www.iana.org/assignments/language-subtag-registry The IANA language subtag registry. AUTHOR
See Locale::Codes for full author history. Currently maintained by Sullivan Beck (sbeck@cpan.org). COPYRIGHT
Copyright (c) 2011-2012 Sullivan Beck This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.16.2 2012-10-11 Locale::Codes::LangExt(3pm)
All times are GMT -4. The time now is 08:08 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy