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Top Forums Shell Programming and Scripting Merging rows using two common rows. Post 302719355 by empyrean on Monday 22nd of October 2012 11:47:37 AM
Old 10-22-2012
Merging rows using two common rows.

Hi..

My requirement is simple but unable to get that..

File 1 :
 
3 415 A G
4 421 G .
39 421 G A
2 421 G A,C
41 427 A .
4 427 A C
42 436 G .
3 436 G C
43 445 C .
2 445 C T
41 447 A .

Output

3415AG
4,39,2421G.;A;A,C
41,4427A.;C
42,3436G.;C
43,2445C.;T
41447A.

the common columns/keys are 2 and 3 and based on them, i need to merge column 1 and column 4

i used this awk code to combine

Code:
awk '{ x[$1]=x[$1] " " $3;}
END {
   for (k in x) print k,x[k] >"OUTPUT1";
}' File

Above one is for checking using one common column and merging one column, but i have two here.. any suggestions for modifications? the other thing i am unable to achieve is to keep commas/semicolons while merging column 1 and 4..
 

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COLRM(1)						    BSD General Commands Manual 						  COLRM(1)

NAME
colrm -- remove columns from a file SYNOPSIS
colrm [start [stop]] DESCRIPTION
The colrm utility removes selected columns from the lines of a file. A column is defined as a single character in a line. Input is read from the standard input. Output is written to the standard output. If only the start column is specified, columns numbered less than the start column will be written. If both start and stop columns are spec- ified, columns numbered less than the start column or greater than the stop column will be written. Column numbering starts with one, not zero. Tab characters increment the column count to the next multiple of eight. Backspace characters decrement the column count by one. ENVIRONMENT
The LANG, LC_ALL and LC_CTYPE environment variables affect the execution of colrm as described in environ(7). EXIT STATUS
The colrm utility exits 0 on success, and >0 if an error occurs. SEE ALSO
awk(1), column(1), cut(1), paste(1) HISTORY
The colrm command appeared in 3.0BSD. BSD
August 4, 2004 BSD
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