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Top Forums Shell Programming and Scripting Merging multiple files from multiple columns Post 302716829 by bartman2099 on Wednesday 17th of October 2012 05:43:56 AM
Old 10-17-2012
Hi guruprasadpr,
Many thanks for your reply. I have tried the command you suggest but it tells me: "join: File 2 is not in sorted order" which I think probably comes from the header line because column 4 is in sorted order.
Any suggestions how to get around that problem? I don't want to make a copy of the files without headers because they are quite big and our disk space is limited.
 

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JOIN(1) 							   User Commands							   JOIN(1)

NAME
join - join lines of two files on a common field SYNOPSIS
join [OPTION]... FILE1 FILE2 DESCRIPTION
For each pair of input lines with identical join fields, write a line to standard output. The default join field is the first, delimited by whitespace. When FILE1 or FILE2 (not both) is -, read standard input. -a FILENUM print unpairable lines coming from file FILENUM, where FILENUM is 1 or 2, corresponding to FILE1 or FILE2 -e EMPTY replace missing input fields with EMPTY -i, --ignore-case ignore differences in case when comparing fields -j FIELD equivalent to `-1 FIELD -2 FIELD' -o FORMAT obey FORMAT while constructing output line -t CHAR use CHAR as input and output field separator -v FILENUM like -a FILENUM, but suppress joined output lines -1 FIELD join on this FIELD of file 1 -2 FIELD join on this FIELD of file 2 --check-order check that the input is correctly sorted, even if all input lines are pairable --nocheck-order do not check that the input is correctly sorted --header treat the first line in each file as field headers, print them without trying to pair them --help display this help and exit --version output version information and exit Unless -t CHAR is given, leading blanks separate fields and are ignored, else fields are separated by CHAR. Any FIELD is a field number counted from 1. FORMAT is one or more comma or blank separated specifications, each being `FILENUM.FIELD' or `0'. Default FORMAT outputs the join field, the remaining fields from FILE1, the remaining fields from FILE2, all separated by CHAR. If FORMAT is the keyword 'auto', then the first line of each file determines the number of fields output for each line. Important: FILE1 and FILE2 must be sorted on the join fields. E.g., use ` sort -k 1b,1 ' if `join' has no options, or use ` join -t '' ' if `sort' has no options. Note, comparisons honor the rules specified by `LC_COLLATE'. If the input is not sorted and some lines cannot be joined, a warning message will be given. AUTHOR
Written by Mike Haertel. REPORTING BUGS
Report join bugs to bug-coreutils@gnu.org GNU coreutils home page: <http://www.gnu.org/software/coreutils/> General help using GNU software: <http://www.gnu.org/gethelp/> Report join translation bugs to <http://translationproject.org/team/> COPYRIGHT
Copyright (C) 2011 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>. This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. SEE ALSO
comm(1), uniq(1) The full documentation for join is maintained as a Texinfo manual. If the info and join programs are properly installed at your site, the command info coreutils 'join invocation' should give you access to the complete manual. GNU coreutils 8.12.197-032bb September 2011 JOIN(1)
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