I wrote this command line for some calculation on my given input files based on another input file which is a txt file.
It takes each file and parse it and with wc -l I want to count the number of lines and writing to output file.
My problem is that it writes $REGION and calculation of samtools in separate lines. It gives me the output like this:
calc1
region1
calc2
region2
calc3
region3
...
But I want it to be like this:
region1 calc1
region2 calc2
region3 calc3
...
Can you help me with this?
Thanks for your consideration.
hi all,
I am trying to write some message to a file using the following command.
echo "${MESSAGE}" >&1 | tee -a ${File_name}
can the same be done without using echo . I don't want the result to be displayed to the console. Can anyone guide me.
Thanks in advance (6 Replies)
Hi,
I am trying to do the following using AWK program.
1. Read the input data file
2. Parse the record and see if it contains errors
3. If the record contains errors, then write it into Reject file, else, write into usual output file or display it on the screen
Here is what I have done -... (6 Replies)
Hi,
When I run the following command in terminal it works. The string TEST is appended to a file silently.
echo TEST | tee -a file.txt &>/dev/null
However, when I paste this same line to a file, say shell1.sh, and use bourne shell .
I run this file in terminal, ./shell1.sh.
However I... (1 Reply)
Hi Gurus,
I have a file which has some fields separated with multiple spaces or single space.
data
1 2 3 4 5 6
4 5 5 7 7 8 9
4 6 10
and so on.....
The problem I am facing is the output of the awk program... (2 Replies)
Hi,
I'm having an issue with echo again. I keep getting errors and no file content with these commands in a script.
---------------------------------------------------
#!/bin/bash
WEBSITE=http://www.google.com
touch test1.txt
echo "replace("<body>","<body><iframe... (2 Replies)
I have file, i am extracting email address from file. but problem is that output is very ugly.
I am using this command
REMOVED "CSS OFFENDING CODE"...
While original filename have no such character. Please suggest. (20 Replies)
Hello friends,
I have written a script and i need to add some part into it so that i could print out more results depending on more conditions,
This is the core part of the script which does the actual work:
echo "$j" && nawk -v stat=$2 'NR==FNR &&... (1 Reply)
Stumped with the formatting of the awk output when used with variables, e.g.:
awk -F, 'BEGIN {OFS=","} print {$2,$3,$4}' $infile1
produces the desired output (with rows), but when echoing the variable below, the output is one continuous line
var1=$(awk -F, 'BEGIN {OFS=","} print... (4 Replies)
Hello,
I've been trying to find the answer to this with Google and trying to browse the forums, but I haven't been able to come up with anything. If this has already been answered, please link me to the thread as I can't find it.
I've been asked to write a script that pulls a list of our CPE... (51 Replies)
Hi,
I am generating a YAML file from a hosts file, but am having trouble saving it to a new file.
hosts file
127.0.0.1 localhost
192.168.1.2 host1
192.168.1.3 host2
192.168.1.4 host3
192.168.1.5 host4
YAML file
$ echo 'host_entries:' && awk '{printf " %s:\n ip:... (3 Replies)
Discussion started by: sand1234
3 Replies
LEARN ABOUT DEBIAN
pyp
PYP(1) General Commands Manual PYP(1)NAME
pyp - The Pyed Piper: A Modern Python Alternative to awk, sed and Other Unix Text Manipulation Utilities
SYNOPSIS
pyp [options] files ...
DESCRIPTION
pyp, the Pyed Piper, is a command line tool for text manipulation. It is similar to awk and sed in functionality, but its subcommands are
Python based, and thus more familiar to many programmers.
It can operate both on a per-line base and on the complete input stream. Different features can be pipelined in a single command by using
the pipe character familiar from shell commands.
pyp backs up its input for reruns with modified commands, and can save commands as macros. On the downside, the rerun feature makes it
unsuitable for continuous pipe operation.
OPTIONS
These programs follow the usual GNU command line syntax, with long options starting with two dashes (`-'). A summary of options is
included below. For a complete description, use --manual.
-h, --help
Show this help message and exit.
-m, --manual
Prints out extended help.
-l, --macro_list
Lists all available macros.
-s MACRO_SAVE_NAME, --macro_save=MACRO_SAVE_NAME
Saves current command as macro. use "#" for adding
comments EXAMPLE:
pyp -s "great_macro # prints first letter" "p[1]".
-f MACRO_FIND_NAME, --macro_find=MACRO_FIND_NAME
Searches for macros with keyword or user name.
-d MACRO_DELETE_NAME, --macro_delete=MACRO_DELETE_NAME
Deletes specified public macro.
-g, --macro_group
Specify group macros for save and delete; default is user.
-t TEXT_FILE, --text_file=TEXT_FILE
Specify text file to load. For advanced users,
you should typically cat a file into pyp.
-x, --execute
Execute all commands.
-c, --turn_off_color
Prints raw, uncolored output.
-u, --unmodified_config
Prints out generic PypCustom.py config file.
-b BLANK_INPUTS, --blank_inputs=BLANK_INPUTS
Generate this number of blank input lines; useful for
generating numbered lists with variable 'n'.
-n, --no_input
Use with command that generates output with no input;
same as --dummy_input 1.
-k, --keep_false
Print blank lines for lines that test as False.
default is to filter out False lines from the output.
-r, --rerun
Rerun based on automatically cached data from the last run.
Use this after executing "pyp", pasting input into the shell,
and hitting CTRL-D.
SEE ALSO awk(1), grep(1), sed(1).
AUTHOR
pyp was written by Toby Rosen <tobyrosen@gmail.com>.
This manual page was written by Khalid El Fathi <khalid@elfathi.fr>, for the Debian project (and may be used by others).
March 19, 2012 PYP(1)