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Top Forums Shell Programming and Scripting Search specific name in a file and fetch specific entries Post 302716361 by manigrover on Tuesday 16th of October 2012 08:44:37 AM
Old 10-16-2012
Search specific name in a file and fetch specific entries

Hi all,

I have 2 files, One file contain data like this


Code:
FHIT 
CS 
CHRM1 
PDE3A 
PDE3B 
HSP90AA1 
PTK2 
HTR1A 
ESR1 
PARP1 
PLA2G1B

These names are mentioned in the second file(Please see attached second file) as

# Drug_Target_X_Gene_NameWhere X can be any number (1-1000)

Now the second file contain data like this where these entries (Drug_Target_X_Gene_Name) are present

#BEGIN_DRUGCARD DB0xxxx (0001- 8820)

# Drug_Target_X_Gene_Name

Description

#END_DRUGCARD DB0xxxx (0001- 8820)



So, if any entry of first file matches with second file

Drug_Target_X_Gene_Name

I want to fetch following entry in a separate file

# Description:

So, if the CHRM1 from first file is present in Drug Card 00001 of second file as # Drug_Target_X_Gene_Name
the output shuld be



Code:
CHRM1       (Description in front like thid for eg: Lepirudin is identical to        natural hirudin except for substitution of  .....)

It is also possible CHRM1 is present in more than one drug cards, in that case there will be two different descriptions from two different drug cards



Code:
CHRM1       (Description in front like this for eg: Lepirudin is identical to        natural hirudin except for substitution of  .....) 
CHRM1       (Description in front like this for eg: Dornase alfa is a biosynthetic form of human deoxyribunuclease I (DNase I) enzyme. It is produced in genetically modified    Chinese hamster ovary   .....)

In same way for all entries of first file I need description from drug cards of second file if these entries are present in any of the drug card of second file.

Any help will be really appreciated.
 

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PAPS(1) 						      General Commands Manual							   PAPS(1)

NAME
paps - UTF-8 to PostScript converter using Pango SYNOPSIS
paps [options] files... DESCRIPTION
paps reads a UTF-8 encoded file and generates a PostScript language rendering of the file. The rendering is done by creating outline curves through the pango ft2 backend. OPTIONS
These programs follow the usual GNU command line syntax, with long options starting with two dashes (`-'). A summary of options is included below. --landscape Landscape output. Default is portrait. --columns=cl Number of columns output. Default is 1. --font=desc Set the font description. Default is Monospace 12. --rtl Do rtl layout. --paper ps Choose paper size. Known paper sizes are legal, letter, a4. Default is A4. --bottom-margin=bm Set bottom margin in postscript points (1/72 inch). Default is 36. --top-margin=tm Set top margin. Default is 36. --left-margin=lm Set left margin. Default is 36. --right-margin=rm Set right margin. Default is 36. --help Show summary of options. --header Draw page header for each page. --markup Interpret the text as pango markup. --encoding=ENCODING Assume the documentation encoding is ENCODING. --lpi Set the lines per inch. This determines the line spacing. --cpi Set the characters per inch. This is an alternative method of specifying the font size. --stretch-chars Indicates that characters should be stretched in the y-direction to fill up their vertical space. This is similar to the texttops behaviour. AUTHOR
paps was written by Dov Grobgeld <dov.grobgeld@gmail.com>. This manual page was written by Lior Kaplan <kaplan@debian.org>, for the Debian project (but may be used by others). April 17, 2006 PAPS(1)
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