Sponsored Content
Full Discussion: ordering
Top Forums Shell Programming and Scripting ordering Post 302714605 by johnkim0806 on Friday 12th of October 2012 10:29:41 AM
Old 10-12-2012
ordering

file1
Code:
1 SNP2 3
1 SNP3 3
1 SNP5 4
2 SNP1 4
2 SNP4 4

file2
Code:
SNP1 1 1 1
SNP5 5 5 5
SNP4 4 4 4
SNP2 2 2 2
SNP3 1 1 1

desired output
Code:
SNP2 2 2 2 
SNP3 3 3 3
SNP5 5 5 5
SNP1 1 1 1
SNP4 4 4 4

note that file1 and file2 has the same SNPs, in different order.
but i want desired output in the same SNP order as file1.
thanks!

Last edited by Scrutinizer; 10-12-2012 at 12:34 PM.. Reason: code tags
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

proper ordering of o/p values

Hi, Below is my script which creates a file: #!/bin/sh if then echo "Enter bill period " echo "Syntax: sh cpd.sh G08" exit fi sqlplus uname/pwd@dbname <<EOF set WRAP off set FEEDBACK off set PAGESIZE 0 set VERIFY off (14 Replies)
Discussion started by: ss_ss
14 Replies

2. Shell Programming and Scripting

File ordering by portion of filename

Hi, Lets say I have a few xml files: 1234567894.xml abc_1234567895.xml abc_000_1234567890.xml abc_0000000_1234567893.xml 684_abc_000_1234567899.xml The naming convention of the files is: xxxxx_timestamp.xml OR timestamp.xml where x can be anything and I would like to order them by... (4 Replies)
Discussion started by: Leion
4 Replies

3. Homework & Coursework Questions

word ordering problem HELP please (linux)

Hi guys I need you ,please help me i have to do this for tomorow and i don't understand how to do Q1 : Order the words of RADIO.txt by frequency Q2 : Order the words of RADIO.txt in alphabétique order Q3 : Order the words of RADIO.txt par ordre "rhymique" (exemple, put togeder words which are... (1 Reply)
Discussion started by: Lili
1 Replies

4. Shell Programming and Scripting

ordering a data file

With an input file like this: How can I get an output like this? (In the quoted examples, the "_" sign represents an empty space) Note that there are some minus signs and no spaces, in the example above the first character of the first line is an empty space, so each number spans 10... (16 Replies)
Discussion started by: lego
16 Replies

5. Shell Programming and Scripting

Re-ordering data

input Predictions for job: 1299399580 ********************************************** gg18_qqq10_100017878_100017978_- ============================================================================== zzz Factor: XXX, ttt: crsmsgw, Cutoff: 0.6429 seqe Position fff Coordinate K-mer Score ... (3 Replies)
Discussion started by: quincyjones
3 Replies

6. Shell Programming and Scripting

Re ordering lines - Awk

Is it possible to re-order certain rows as columns (of large files). Few lines from the file for reference. input Splicing Factor: Tra2beta, Motif: aaguguu, Cutoff: 0.5000 Sequence Position Genomic Coordinate K-mer Score 97 chr1:67052604 uacuguu 0.571 147... (3 Replies)
Discussion started by: quincyjones
3 Replies

7. Shell Programming and Scripting

Random ordering

1 2 4 5 3 I would like to use a script so that i can randomly rearrange these numbers such as 3 5 2 4 1 Thanks! (3 Replies)
Discussion started by: johnkim0806
3 Replies

8. Shell Programming and Scripting

Ordering Folders having Date as Names

Hi All, I have directories under /development/arun/weekly/ 20120421 20120414 . . . . I need to arrange these directories in descending order. folder name with recent date will be on top and then others. (1 Reply)
Discussion started by: Arun Mishra
1 Replies

9. Shell Programming and Scripting

Ordering batch number

Hi, Could some one please help to order the batch number in sequence. I will be getting bunch of files with batch number in folder1 which are not in sequence. I need to move all files from folder1 to folder2 with batch number in sequence. Header record looks like PROCESS1... (8 Replies)
Discussion started by: zooby
8 Replies

10. Shell Programming and Scripting

Bash - re-ordering list of parameters

Hello. I have a script that writes parameters in alphabetic order. But I have a parameter which have 3 lines. There is no continuation character ( '\' ). Each of the three lines finish with 'cr'. But line 2 and 3 of the concerning parameter start with a tab char (but should be one or more... (7 Replies)
Discussion started by: jcdole
7 Replies
Graph(3pm)						User Contributed Perl Documentation						Graph(3pm)

NAME
SVG::Graph - Visualize your data in Scalable Vector Graphics (SVG) format. SYNOPSIS
use SVG::Graph; use SVG::Graph::Data; use SVG::Graph::Data::Datum; #create a new SVG document to plot in... my $graph = SVG::Graph->new(width=>600,height=>600,margin=>30); #and create a frame to hold the data/glyphs my $frame = $graph->add_frame; #let's plot y = x^2 my @data = map {SVG::Graph::Data::Datum->new(x=>$_,y=>$_^2)} (1,2,3,4,5); my $data = SVG::Graph::Data->new(data => @data); #put the xy data into the frame $frame->add_data($data); #add some glyphs to apply to the data in the frame $frame->add_glyph('axis', #add an axis glyph 'x_absolute_ticks' => 1, #with ticks every one #unit on the x axis 'y_absolute_ticks' => 1, #and ticks every one #unit on the y axis 'stroke' => 'black', #draw the axis black 'stroke-width' => 2, #and 2px thick ); $frame->add_glyph('scatter', #add a scatterplot glyph 'stroke' => 'red', #the dots will be outlined #in red, 'fill' => 'red', #filled red, 'fill-opacity' => 0.5, #and 50% opaque ); #print the graphic print $graph->draw; DESCRIPTION
SVG::Graph is a suite of perl modules for plotting data. SVG::Graph currently supports plots of one-, two- and three-dimensional data, as well as N-ary rooted trees. Data may be represented as: Glyph Name Dimensionality supported 1d 2d 3d tree -------------------------------------------------------- Axis x Bar Graph x Bubble Plot x Heatmap Graph x Line Graph x Pie Graph x Scatter Plot x Spline Graph x Tree x SVG::Graph 0.02 is a pre-alpha release. Keep in mind that many of the glyphs are not very robust. PLOTTING
You need to create a SVG::Graph::Frame instance from the parent SVG::Graph instance for each set of data to be plotted. Datasets can be hierarchical, and to represent this, SVG::Graph::Frame instances can themselves contain subframes. SVG::Graph::Frame can contain: - multiple subframes as instances of SVG::Graph::Frame - a single SVG::Graph::Data instance - multiple SVG::Graph::Glyph instances with which to render the attached SVG::Graph::Data instance, and all SVG::Graph::Data instances attached to SVG::Graph::Frame subinstances See SVG::Graph::Frame and SVG::Graph::Glyph for details. ONE DATA SET 1. create an SVG::Graph instance 2. create an SVG::Graph::Frame instance by calling SVG::Graph::add_frame(); 3. create an SVG::Graph::Data instance, containing an SVG::Graph::Data::Datum instance for each data point. 4. Attach the SVG::Graph::Data instance to your SVG::Graph::Frame using SVG::Graph::Frame::add_data(); 5. Attach glyphs to the SVG::Graph::Frame instance using SVG::Graph::Frame::add_glyph(); 6. Call SVG::Graph::draw(); MULTIPLE DATA SETS 1. create an SVG::Graph instance 2. create an SVG::Graph::Frame instance by calling SVG::Graph::add_frame(); 3. create an SVG::Graph::Data instance, containing an SVG::Graph::Data::Datum instance for each data point. 4. Attach the SVG::Graph::Data instance to your SVG::Graph::Frame using SVG::Graph::Frame::add_data(); 5. Attach glyphs to the SVG::Graph::Frame instance using SVG::Graph::Frame::add_glyph(); 6. repeat [2-5] for each additional data set to be added. add_frame() can be called on SVG::Graph to add top-level data sets, or SVG::Graph::Frame to add hierarchical data sets. 7. Call SVG::Graph::draw(); FEEDBACK
Send an email to the svg-graph-developers list. For more info, visit the project page at http://www.sf.net/projects/svg-graph AUTHORS
Allen Day, <allenday@ucla.edu> Chris To, <crsto@ucla.edu> CONTRIBUTORS
James Chen, <chenj@seas.ucla.edu> Brian O'Connor, <boconnor@ucla.edu> SEE ALSO
SVG METHODS
new Title : new Usage : my $graph = SVG::Graph->new(width=>600, height=>600, margin=>20); Function: creates a new SVG::Graph object Returns : a SVG::Graph object Args : width => the width of the SVG height => the height of the SVG margin => margin for the root frame init Title : init Usage : Function: Example : Returns : Args : width Title : width Usage : $obj->width($newval) Function: Example : Returns : value of width (a scalar) Args : on set, new value (a scalar or undef, optional) height Title : height Usage : $obj->height($newval) Function: Example : Returns : value of height (a scalar) Args : on set, new value (a scalar or undef, optional) margin Title : margin Usage : $obj->margin($newval) Function: Example : Returns : value of margin (a scalar) Args : on set, new value (a scalar or undef, optional) svg Title : svg Usage : $obj->svg($newval) Function: Example : Returns : value of svg (a scalar) Args : on set, new value (a scalar or undef, optional) add_frame Title : add_frame Usage : my $frame = $graph->add_frame Function: adds a Frame to the current Graph Returns : a SVG::Graph::Frame object Args : a hash. usable keys: frame_transform (optional) 'top' default orientation 'bottom' rotates graph 180 deg (about the center) 'right' points top position towards right 'left' points top position towards left frames Title : frames Usage : get/set Function: Example : Returns : Args : xoffset Title : xoffset Usage : $obj->xoffset($newval) Function: Example : Returns : value of xoffset (a scalar) Args : on set, new value (a scalar or undef, optional) yoffset Title : yoffset Usage : $obj->yoffset($newval) Function: Example : Returns : value of yoffset (a scalar) Args : on set, new value (a scalar or undef, optional) draw Title : draw Usage : $graph=>draw Function: depends on child glyph implementations Returns : xmlifyied SVG object Args : none perl v5.10.0 2009-01-07 Graph(3pm)
All times are GMT -4. The time now is 06:51 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy