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Full Discussion: sort script
Top Forums Shell Programming and Scripting sort script Post 302713531 by LMHmedchem on Wednesday 10th of October 2012 11:56:39 PM
Old 10-11-2012
Quote:
Originally Posted by jim mcnamara
IMO: your idea lacks merit.

You should simply insert the data into a db with a loader, then produce output. If you have Excel you have MS office and probably a db like Access. UNIX has free db's: mysql, Berekely db, etc.

So, Why does your idea look like reinventing the wheel?

The reason is that Don Cragun is right. You have to have complete metadata for each and every column to be able to sort based on arbitrary column selections. And there is too much metadata to cobble together anything useful in shell. Metadata can change. db's are meant for that contingency.

The way it is now, you have to know what you are sorting by looking at it - in effect gathering metadata. You have to use human intelligence to make decisions. Then use unix sort/Excel sort. Databases are meant to do this. You just tell db's to sort on column names, optionally: ascending or descending for each column. You can write database scripts (SQL language for example) to do stats or a lot of what you already can do in Excel.

So, stay in Excel or move to a db. I vote for a db.
Yes, a database would be nice. I am in the process of working on a database system for some of this data, but there are non-trivial issues with other parts of it not related to this, so I am finishing what I am working on using some scripting tools that I already have. The sorting is the only part of the process that is not already scripted, so I am having to open each file in excel, set up a sort, save the file, and then do some shell to get the txt file back to linux land. All of these sorts are on ints and in ascending order. I have a few hundred to do, so after the first several, I started thinking that there had to be a better way.

I am in one of those situations where the choice is between slogging through an inefficient process, or taking allot of time to set up the correct process. I don't know SQL at all, so I am reluctant to spend days getting all of that set up when the sort function is the only thing that I can't automate. Of course, after taking the time to learn and set it up, I would have learned more tools, and that is not a small thing in any way. Eventually I will do all of the steps I am doing now with SQL queries out of SQLite, using ruby scripts to populate the database (and eventually a browser interface). For now, someone is waiting on the results for this and I need to get it done as quickly as possible. Even if I have to hard code modify a separate script for each sorting criteria, that will still be much faster than all the excel, especially since I have to modify the resulting excel file. I will have to do this process again with other data, so once the scripts are set up, I should be able to automate the entire process.

I was thinking that if I was going to set up a sort script, I might as well try to make is a general a tool as possible so that it could be useful for other things. It does appear that there is allot of possible variation in how the script would need to operate in different cases, so perhaps my thinking was not realistic. Never the less, it would be a significant help with my current project and would not need to be generalized for that purpose.

LMHmedchem
 

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Prima::DetailedList(3)					User Contributed Perl Documentation				    Prima::DetailedList(3)

NAME
Prima::DetailedList - a multi-column list viewer with controlling header widget. SYNOPSIS
use Prima::DetailedList; my $l = $w-> insert( 'Prima::DetailedList', columns => 2, headers => [ 'Column 1', 'Column 2' ], items => [ ['Row 1, Col 1', 'Row 1, Col 2'], ['Row 2, Col 1', 'Row 2, Col 2'] ], ); $l-> sort(1); DESCRIPTION
Prima::DetailedList is a descendant of Prima::ListViewer, and as such provides a certain level of abstraction. It overloads format of items in order to support multi-column ( 2D ) cell span. It also inserts Prima::Header widget on top of the list, so the user can interactively move, resize and sort the content of the list. The sorting mechanism is realized inside the package; it is activated by the mouse click on a header tab. Since the class inherits Prima::ListViewer, some functionality, like 'item search by key', or "get_item_text" method can not operate on 2D lists. Therefore, mainColumn property is introduced, that selects the column representing all the data. API
Events Sort COLUMN, DIRECTION Called inside sort method, to facilitate custom algorithms of sorting. If the callback procedure is willing to sort by COLUMN index, then it must call "clear_event", to signal the event flow stop. The DIRECTION is a boolean flag, specifying whether the sorting must be performed is ascending ( 1 ) or descending ( 0 ) order. The callback procedure must operate on the internal storage of "{items}", which is an array of arrays of scalars. The default action is the literal sorting algorithm, where precedence is arbitrated by "cmp" operator ( see "Equality Operators" in perlop ) . Properties columns INTEGER Governs the number of columns in items. If set-called, and the new number is different from the old number, both items and headers are restructured. Default value: 0 headerClass Assigns a header class. Create-only property. Default value: "Prima::Header" headerProfile HASH Assigns hash of properties, passed to the header widget during the creation. Create-only property. headerDelegations ARRAY Assigns a header widget list of delegated notifications. Create-only property. headers ARRAY Array of strings, passed to the header widget as column titles. items ARRAY Array of arrays of scalars, of arbitrary kind. The default behavior, however, assumes that the scalars are strings. The data direction is from left to right and from top to bottom. mainColumn INTEGER Selects the column, responsible for representation of all the data. As the user clicks the header tab, "mainColumn" is automatically changed to the corresponding column. Default value: 0 Methods sort [ COLUMN ] Sorts items by the COLUMN index in ascending order. If COLUMN is not specified, sorts by the last specified column, or by #0 if it is the first "sort" invocation. If COLUMN was specified, and the last specified column equals to COLUMN, the sort direction is reversed. The method does not perform sorting itself, but invokes Sort notification, so the sorting algorithms can be overloaded, or be applied differently to the columns. AUTHOR
Dmitry Karasik, <dmitry@karasik.eu.org>. SEE ALSO
Prima, Prima::Lists, Prima::Header, examples/sheet.pl perl v5.14.2 2009-02-24 Prima::DetailedList(3)
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