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Full Discussion: reading information from a table and apply a command on multiple files
Top Forums Shell Programming and Scripting reading information from a table and apply a command on multiple files Post 302708861 by @man on Tuesday 2nd of October 2012 10:29:46 AM
Old 10-02-2012
Thanks RudiC. It seems it's working just fine.
Now I have many files which I cannot open them. I believe it's because of their name:

one example:
gi|16799079|ref|NC_003212.1|:2769071-2769101.txt

How can I rename them all by replacing pipes and colons by underscore for example to have something like this:

gi_16799079_ref_NC_003212.1__2769071-2769101.txt

I appreciate your help!
 

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LEARN ABOUT DEBIAN

ecaccess-file-move

ECACCESS-FILE-MOVE(1p)					User Contributed Perl Documentation				    ECACCESS-FILE-MOVE(1p)

NAME

       ecaccess-file-move - Move or Rename ECaccess Files

SYNOPSIS

       ecaccess-file-move -version|-help|-manual

       ecaccess-file-move [-debug] source-ecaccess-file target-ecaccess-file

DESCRIPTION

       Allow moving an ECaccess File. When the move occurs within the same ECaccess File System then it is a rename. When the move occurs across
       two different ECaccess File Systems then first a copy is done and then a delete of the original file is done (e.g. similar to ecaccess-
       file-copy ... -erase).

       The source-ecaccess-file and target-ecaccess-file are in the form [domain:][/user-id/]path. Please read the "Shell commands -> File
       Management" section of the "ecaccess" guide for more information on the ECaccess File System.

ARGUMENTS

       source-ecaccess-file
	       The source ECaccess File name.

       target-ecaccess-file
	       The target ECaccess File name.

OPTIONS

       -version
	       Display version number and exits.

       -help   Print a brief help message and exits.

       -manual Prints the manual page and exits.

       -debug  Display the SOAP messages exchanged.

EXAMPLES

       ecaccess-file-move ec:test1.txt ec:test2.txt

       Rename the test1.txt file in the ECFS directory of the authenticated user in test2.txt.

       ecaccess-file-move ec:test1.txt home:test2.txt

       Copy the test1.txt file from the ECFS directory of the authenticated user to the test2.txt file in the $HOME directory of the authenticated
       user, then delete the test1.txt file from ECFS.

SEE ALSO

       ecaccess-file-delete, ecaccess-file-get, ecaccess-file-mget, ecaccess-file-modtime, ecaccess-file-mput, ecaccess-file-rmdir, ecaccess-file-
       copy, ecaccess-file-dir, ecaccess-file-mdelete, ecaccess-file-mkdir, ecaccess-file-chmod, ecaccess-file-put, ecaccess-file-size and
       ecaccess.

perl v5.14.2							    2012-04-16						    ECACCESS-FILE-MOVE(1p)
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