Hi there,
I'm wanting to produce a shell script that will check through some file names and identify a skip in sequence (four digit seq num in file name).
I have played on the idea of havng a file that has a sorted list of file names which I can read line at a time and cut out the sequence... (1 Reply)
A developer of mine has this requirement - I couldn't tell her quickly how to do it with UNIX commands or a quick script so she's writing a quick program to do it - but that got my curiousity up and thought I'd ask here for advice.
In a text file, there are some records (about half of them)... (4 Replies)
Hi,
I have a data as follow:
1 400
2 239
3 871
4 219
5 543
6 ...
7 ...
.. ...
.. ...
99 818
100 991
I want to replace the sequence number (column 1) that start from 150. The output should like this:
150 400
151 239 (3 Replies)
Hi,
I have a string like:
DBMS stats (Number Used | Percentage of total): 10 | 1.00%
I have a sed command to extract numbers from this string:
sed "s///g;s/^$/-1/;"
Output: 10100
However what I want the sed command to return is only the first number(regardless of its size) i.e.... (3 Replies)
Dear Perl users,
I need your help to solve my problem below.
I want to print the sequence number without missing number within the range.
E.g. my sequence number :
1 2 3 4 5 6 7 8 11 12 13 14
my desired output:
1 -8 , 11-14
my code below but still problem with the result:
1 - 14
1 -... (2 Replies)
Am using unix aix KSH...
I have the files called
MMRR0106.DAT
MMRR0206.DAT
MMRR0406.DAT
MMRR0506.DAT
MMRR0806.DAT
....
...
MMRR3006.DAT
MMRR0207.DAT
These files are in one dircetory /venky ?
I want the output like this ?
Missing files are :
MMRR0306.DAT
MMRR0606.DAT... (7 Replies)
Hi Forum:
I have struggle with it and decide to use my eye ball to accomplish this.
Basically I am looking for sequence of date inside a file.
If one of the sequence repeat 2-3 time or skip once; it's still consider a match.
input text file:
Sep 6 A
Sep 6 A
Sep 10 A
Sep 7 B
Sep 8... (7 Replies)
Hi,
Need to add sequnce number to one of the csv file and please find below
actual requirement.
Input file
ABC,500
XXQ,700
ADF,400,
ART,200
Out put file should be
1,ABC,500
2,XXQ,700
3,ADF,400,
4,ART,200 (3 Replies)
Hello, here I am posting my query again with modified data input files.
see my query is :
i have two input files file1 and file2.
file1 is smalldata.fasta
>gi|546671471|gb|AWWX01449637.1| Bubalus bubalis breed Mediterranean WGS:AWWX01:contig449636, whole genome shotgun sequence... (20 Replies)
Discussion started by: harpreetmanku04
20 Replies
LEARN ABOUT DEBIAN
swiss::dts
SWISS::DTs(3pm) User Contributed Perl Documentation SWISS::DTs(3pm)Name
SWISS::DTs
Description
SWISS::DTs represents the DT lines within an Swiss-Prot + TrEMBL entry as specified in the user manual
http://www.expasy.org/sprot/userman.html .
Inherits from
SWISS::BaseClass.pm
Attributes
"CREATED_date"
Creation date
"ANN_date"
Last annotation update
"SQ_date"
Last Sequence update
"CREATED_rel"
Created for release
"ANN_rel"
Last annotation for release
"SQ_rel"
Last sequence update for release
"ANN_version"
Version number for entry annotation
"SQ_version"
Version number for sequence
Methods
Standard methods
new
fromText
toText
sort
Writing methods
set_Created ($date, $release)
set_AnnotationUpdate ($date, $release[, $version])
set_SequenceUpdate ($date, $release[, $version])
TRANSITION
The format of the DT line will change in early 2004 from:
DT 01-JUL-1993 (Rel. 26, Created)
DT 01-JUL-1993 (Rel. 26, Last sequence update)
DT 28-FEB-2003 (Rel. 41, Last annotation update)
to:
DT 01-JUL-1993, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-1993, sequence version 36.
DT 28-FEB-2003, entry version 54.
This module supports both formats. To convert an entry from the old to the new format, do:
$entry->DTs->CREATED_rel("UniProtKB/Swiss-Prot");
$entry->DTs->ANN_version(54);
$entry->DTs->SQ_version(36);
perl v5.10.1 2008-07-11 SWISS::DTs(3pm)