09-14-2012
The question is a bit too vague to help with right now.
How are they stored right now? Right in the webpages themselves, some sort of flat-file, or in some 'less-advanced' database than your 'advanced' database?
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LEARN ABOUT DEBIAN
makemat
MAKEMAT(1) NCBI Tools User's Manual MAKEMAT(1)
NAME
makemat - convert binary profiles into portable ASCII form
SYNOPSIS
makemat [-] [-E N] [-G N] [-H] [-P filename] [-S X] [-U str] [-d str] [-z N]
DESCRIPTION
makemat converts a collection of binary profiles, created by the -C option of PSI-BLAST, into portable ASCII form.
OPTIONS
A summary of options is included below.
- Print usage message
-E N Cost to extend a gap (default = 1)
-G N Cost to open a gap (default = 11)
-H Print help; overrides all other arguments
-P filename
Database name for profile database (default = stdin)
-S X Scaling factor for matrix outputs to avoid round-off problems (default = 100)
-U str Underlying Matrix (default = BLOSUM62)
-d str Underlying sequence database used to make profiles (default = nr)
-z N Effective length of the profile database (0 for length of -d option)
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO
blast(1), copymat(1), /usr/share/doc/blast2/impala.html
NCBI
2004-06-25 MAKEMAT(1)