Sponsored Content
Top Forums Shell Programming and Scripting open files with multiple indexes Post 302699235 by linseyr on Tuesday 11th of September 2012 09:50:33 AM
Old 09-11-2012
open files with multiple indexes

Hi,

I want to work with multiple files which all contain 2 numbers.
I tried to make a nested for loop but for some reason it doesn't recognize the $j as a number. The output is cannot open file `175-T-pvalue.xls'. How do I make sure that it takes the numbers from the inner loop as $j?

Thanks!
Code:
for i in 148 162 171 174 175
do

	for j in 0.01 0.03 0.05 0.07 0.09
	do

		awk '/^chr/{cnt+=$4; num+=1} END{echo $i"Navg="(cnt/num)}' $i-N-pvalue$j_peaks.xls
		awk '/^chr/{cnt+=$4; num+=1} END{echo $i"Tavg="(cnt/num)}' $i-T-pvalue$j_peaks.xls
	done
done


Last edited by Franklin52; 09-11-2012 at 11:00 AM.. Reason: Please use code tags for data and code samples
 

9 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

using sed with indexes

Hi people, Is this possible and if so any tips are very welcome. Im trying to do the following: this is what I have: 800__1__ this is what I want: 8000010 12345678 Im... (1 Reply)
Discussion started by: seaten
1 Replies

2. Shell Programming and Scripting

Analyze the indexes and rebuild them

Hello UNIX and Oracle Gurus, After doing an intensive search from different websites, the UNIX forum I am posting this message seeking help.. I am trying to accomplish the following tasks through the shell script: 1. Rebuild indexes on a Table in Oracle 2. Analyze indexes and table... (0 Replies)
Discussion started by: madhunk
0 Replies

3. Shell Programming and Scripting

matrix indexes

I wanted to use matrixs in awk and got some problem, here is some of the script code, from the BEGIN tag: row_char="a";row_char="b";row_char="c";row_char="d";row_char="e"$ row_char="h";row_char="i";row_char="j";row_char="k"; from the proccess passage: sentence,1]=1; diffrence=4; i=7;... (2 Replies)
Discussion started by: tal
2 Replies

4. Shell Programming and Scripting

Perl, open multiple files with wildcards

I have a question regarding Perl scripting. If I want to say open files that all look like this and assign them to a filehandle and then assign the filehandle to a variable, how do I do this? The file names are strand1.fa.gz.tmp strand2.fa.gz.tmp strand3.fa.gz.tmp strand4.fa.gz.tmp ...... (6 Replies)
Discussion started by: japaneseguitars
6 Replies

5. UNIX for Dummies Questions & Answers

Using AWK: Extract data from multiple files and output to multiple new files

Hi, I'd like to process multiple files. For example: file1.txt file2.txt file3.txt Each file contains several lines of data. I want to extract a piece of data and output it to a new file. file1.txt ----> newfile1.txt file2.txt ----> newfile2.txt file3.txt ----> newfile3.txt Here is... (3 Replies)
Discussion started by: Liverpaul09
3 Replies

6. Programming

Control multiple program instances - open multiple files problem

Hello. This shouldn't be an unusual problem, but I cannot find anything about it at google or at other search machine. So, I've made an application using C++ and QtCreator. I 've made a new mime type for application's project files. My system (ubuntu 10.10), when I right click a file and I... (3 Replies)
Discussion started by: hakermania
3 Replies

7. UNIX for Advanced & Expert Users

Pass Multiple Commands and Open Multiple Xterms via PSS

Hello, I'm attempting to open multiple xterms and run a command as an SAP user via sudo using PSSH. So far, I'm able to run PSSH to a file of servers with no check for keys, open every xterm in to the servers in the file list, and SUDO to the SAP(ADM) user, but it won't do anything else... (11 Replies)
Discussion started by: icemanj
11 Replies

8. Shell Programming and Scripting

I need to find out disk usage for particular indexes for different hosts

Need disk utilisation script for particular indexes on few hosts (3 Replies)
Discussion started by: Krish5v
3 Replies

9. UNIX for Beginners Questions & Answers

Adding indexes with PERL

Hello. I'm trying to self learn Perl and am stuck. I have a data.csv file that contains the following: 5,10,15,20,15,30 1,2,3,4,5 3,10 11 I'm trying to get Perl to take the indexes and add them all together to get 134. It says I need to use split and invoke the file via <> (built-in... (2 Replies)
Discussion started by: Eric7giants
2 Replies
JOIN(1) 						    BSD General Commands Manual 						   JOIN(1)

NAME
join -- relational database operator SYNOPSIS
join [-a file_number | -v file_number] [-e string] [-o list] [-t char] [-1 field] [-2 field] file1 file2 DESCRIPTION
The join utility performs an ``equality join'' on the specified files and writes the result to the standard output. The ``join field'' is the field in each file by which the files are compared. The first field in each line is used by default. There is one line in the output for each pair of lines in file1 and file2 which have identical join fields. Each output line consists of the join field, the remaining fields from file1 and then the remaining fields from file2. The default field separators are tab and space characters. In this case, multiple tabs and spaces count as a single field separator, and leading tabs and spaces are ignored. The default output field separator is a single space character. Many of the options use file and field numbers. Both file numbers and field numbers are 1 based, i.e., the first file on the command line is file number 1 and the first field is field number 1. The following options are available: -a file_number In addition to the default output, produce a line for each unpairable line in file file_number. -e string Replace empty output fields with string. -o list The -o option specifies the fields that will be output from each file for each line with matching join fields. Each element of list has either the form file_number.field, where file_number is a file number and field is a field number, or the form '0' (zero), repre- senting the join field. The elements of list must be either comma (',') or whitespace separated. (The latter requires quoting to protect it from the shell, or, a simpler approach is to use multiple -o options.) -t char Use character char as a field delimiter for both input and output. Every occurrence of char in a line is significant. -v file_number Do not display the default output, but display a line for each unpairable line in file file_number. The options -v 1 and -v 2 may be specified at the same time. -1 field Join on the field'th field of file1. -2 field Join on the field'th field of file2. When the default field delimiter characters are used, the files to be joined should be ordered in the collating sequence of sort(1), using the -b option, on the fields on which they are to be joined, otherwise join may not report all field matches. When the field delimiter char- acters are specified by the -t option, the collating sequence should be the same as sort(1) without the -b option. If one of the arguments file1 or file2 is '-', the standard input is used. EXIT STATUS
The join utility exits 0 on success, and >0 if an error occurs. COMPATIBILITY
For compatibility with historic versions of join, the following options are available: -a In addition to the default output, produce a line for each unpairable line in both file1 and file2. -j1 field Join on the field'th field of file1. -j2 field Join on the field'th field of file2. -j field Join on the field'th field of both file1 and file2. -o list ... Historical implementations of join permitted multiple arguments to the -o option. These arguments were of the form file_number.field_number as described for the current -o option. This has obvious difficulties in the presence of files named 1.2. These options are available only so historic shell scripts do not require modification and should not be used. SEE ALSO
awk(1), comm(1), paste(1), sort(1), uniq(1) STANDARDS
The join command conforms to IEEE Std 1003.1-2001 (``POSIX.1''). BSD
July 5, 2004 BSD
All times are GMT -4. The time now is 12:50 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy