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Full Discussion: Match look up file and find result
Top Forums Shell Programming and Scripting Match look up file and find result Post 302698591 by CarloM on Monday 10th of September 2012 10:02:49 AM
Old 09-10-2012
Quote:
Originally Posted by manigrover
Hi


Thanks for the reply .I tried following but I m getting error. Not aware how to solve?

Code:
bash-3.2$ awk -F'\t' 'FNR==NR{a[$0]=1;next} {
n=split($6,c," ");
$6=c;
n=split($6,b,",")
for(i=1;i<=n;i++)
 if(b[i] in a)
  print $0, "Approved" > "file_" b[i] ".txt"
}' OFS='\t' lookupfie sarattdnewdruggene4.txt
awk: cmd. line:2: (FILENAME=sarattdnewdruggene4.txt FNR=1) fatal: attempt to use array `c' in a scalar context

It should have been $6=c[m] (although that's actually an unnecessary step anyway):
Code:
carlo@host:/tmp -> cat x.awk
awk -F'\t' 'FNR==NR{a[$0]=1;next} {
   m=split($6,c," ")
   n=split(c[m],b,",")
   $6=""
   for(i=1;i<=n;i++)
      if(b[i] in a)
         print $0, "Approved" "::" "file_" b[i] ".txt"
}' OFS='\t' lookupfile mainfile2
carlo@host:/tmp -> ./x.awk
CHRM1   P11229  Pirenzepine     DAP000492       Peptic ulcer disease            Approved::file_T2D.txt
CHRM1   P11229  Glycopyrrolate  DAP001116       Anesthetic              Approved::file_T2D.txt
CHRM1   P11229  Clidinium       DAP001117       Abdominal/stomach pain          Approved::file_T2D.txt
CHRM1   P11229  Dicyclomine     DAP001118       Irritable bowel syndrome                Approved::file_T2D.txt
CHRM1   P11229  Ethopropazine   DAP001119       Parkinson's disease             Approved::file_T2D.txt
CHRM1   P11229  Cycrimine       DAP001120       Parkinson's disease             Approved::file_T2D.txt
CHRM1   P11229  Benztropine     DAP001121       Parkinson's disease             Approved::file_T2D.txt
CHRM1   P11229  Propantheline   DAP001123       Excessive sweating (hyperhidrosis)              Approved::file_T2D.txt
CHRM1   P11229  Oxyphenonium    DAP001124       Spasm           Approved::file_T2D.txt
CHRM1   P11229  Biperiden       DAP001125       Parkinson's disease             Approved::file_T2D.txt
CHRM1   P11229  Talsaclidine isomer     DCL000268       Alzheimer's disease             Approved::file_T2D.txt
CHRM1   P11229  Sabcomeline hydrochloride       DCL000279       Cardiovascular diseases         Approved::file_T2D.txt
CHRM1   P11229  Talsaclidine fumarate   DCL000303       Alzheimer's disease             Approved::file_T2D.txt
CHRM1   P11229  GSK573719       DCL000381       Chronic Obstructive Pulmonary Disease (COPD)            Approved::file_T2D.txt
CHRM1   P11229  GSK961081       DCL000397       Chronic Obstructive Pulmonary Disease (COPD)            Approved::file_T2D.txt
CHRM1   P11229  GSK1034702      DCL000402       Schizophrenia, Dementia         Approved::file_T2D.txt
CHRM1   P11229  Darotropium     DCL000514       COPD            Approved::file_T2D.txt
CHRM1   P11229  Darotropium + 642444    DCL000515       COPD            Approved::file_T2D.txt
CHRM1   P11229  Revatropate     DCL000957       Chronic obstructive pulmonary disease           Approved::file_T2D.txt
FLT1    P17948  Sorafenib       DAP000006       Advanced renal cell carcinoma           Approved::file_CAD.txt
FLT1    P17948  Sorafenib       DAP000006       Hepatocellular carcinoma, NSCLC, melanoma               Approved::file_CAD.txt
FLT1    P17948  Sorafenib       DAP000006       Myelodyspalstic syndrome, AML, head & neck cancer, breast, colon, ovarian, pancreatic cancer            Approved::file_CAD.txt
FLT1    P17948  Ranibizumab     DAP001260       Age-related macular degeneration                Approved::file_CAD.txt
FLT1    P17948  Ranibizumab     DAP001260       Diabetic macular edema and retinal vein occlusion               Approved::file_CAD.txt
FLT1    P17948  Telbermin       DCL001016       Diabetic foot ulcers            Approved::file_CAD.txt
KDR     P35968  Sunitinib       DAP000005       Advanced renal cell carcinoma           Approved::file_CAD.txt
KDR     P35968  Sunitinib       DAP000005       Advanced renal cell carcinoma           Approved::file_CD.txt
KDR     P35968  Sunitinib       DAP000005       Advanced renal cell carcinoma           Approved::file_CD.txt
KDR     P35968  Sunitinib       DAP000005       Advanced renal cell carcinoma           Approved::file_CAD.txt
KDR     P35968  Sunitinib       DAP000005       Advanced renal cell carcinoma           Approved::file_CD.txt
KDR     P35968  Sunitinib       DAP000005       Advanced renal cell carcinoma           Approved::file_CD.txt
...etc...

(outputting to terminal for testing purposes...)
Last edited by CarloM; 09-10-2012 at 11:22 AM..
 

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