Hey,
I am using 'find' to check the existence of a file which is created today, and this is what I have
find . -name $filename -mtime +0 -exec ls {} \;
my problem is I need to know what the above command actually get anything, so can anyone give me some pointer on how to do... (1 Reply)
Well I have a 3000 lines result log file that contains all the machine data when it does the testing... It has 3 different section that i am intrsted in
1) starting with "20071126 11:11:11 Machine Header 1"
1000 lines...
"End machine header 1"
2) starting with "20071126 12:12:12 Machine... (5 Replies)
Perl Guru....
I need to compare two diff file (file1.abc will locate in current server and file2.abc will locate in remote server), basically the script will look for match in both file and only will send out email if there is no match and also give me list of unmatch and dups as well.
So... (0 Replies)
Hi All,
I have a below file:
==================
02:53 pravin-root
02:53 pravin-root
03:05 pravin-root
02:55 pravin1-root
02:59 pravin1-root
==================
How do I find the first and last value of column 1. For example, how do I find 02:53 is the first time stamp and 03:05 is... (3 Replies)
When searching for some files which match some specific criteria with find from the root directory, I got a listing of a bunch of files that say "Permission Denied". How can do my search and not show the files that I don't have the permission to list?
Thanks, (3 Replies)
Hi
I want to compare 2 files. The files have the same amount of rows and columns. So each line must be compare against the other and if one differs from the other, the result of both must be stored in a seperate file.
I am doing this in awk.
Here is my file1:
Blocks... (2 Replies)
Hi,
I have two input files; file1 and file2. I compare them based on matched values in 1 column and print selected columns of the second file (file2). I got the result but the header was not printed. i want the header of file2 to be printed together with the result. Then i did below codes:-
... (3 Replies)
i run command that return this result,example :
gigabitethernet2/2/4:NotPresent, gigabitethernet2/1/17:UP, gigabitethernet2/1/10:UP, gigabitethernet2/1/5:UP,
gigabitethernet2/1/9:UP, gigabitethernet2/1/36:DOWN, gigabitethernet2/1/33:DOWN, gigabitethernet2/1/8:UP,... (19 Replies)
Hi All,
I have transaction in one file.I want to match that to another file and find the number of time the transaction is available on the other file.I need to take each record from TRANSFILE and match that with SPEND FILE and find the number of counts of the transaction
TRANSFILE:
... (4 Replies)
We have 100 linux servers, All send logs to both centralize server(server1 and serverb).
all send logs every day and stores in /syslog folder with hostname.log file.
I need to prepare script to check every day from both centralize server(server1 and serverb) and send mail in table format.
... (1 Reply)
Discussion started by: yash_message
1 Replies
LEARN ABOUT DEBIAN
bio::tools::match
Bio::Tools::Match(3pm) User Contributed Perl Documentation Bio::Tools::Match(3pm)NAME
Bio::Tools::Match - Parses output from Transfac's match(TM)
SYNOPSIS
use strict;
use Bio::Tools::Match;
my $parser = Bio::Tools::Match->new(-file => "match.out");
while (my $feat = $parser->next_result) {
my $start = $feat->start;
my $end = $feat->end;
my $core_score = $feat->score;
my $matrix_score = ($feat->annotation->get_Annotations('matrix_score'))[0]->value;
my $matrix_id = ($feat->annotation->get_Annotations('matrix_id'))[0]->value;
}
DESCRIPTION
This module is used to parse the output from Transfac's match(TM) program. It doesn't support the histogram output of match.
Each result is a Bio::SeqFeature::Annotated representing a single matrix match.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Sendu Bala
Email bix@sendu.me.uk
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Tools::Match->new();
Function: Builds a new Bio::Tools::Match object
Returns : Bio::Tools::Match
Args : -file (or -fh) should contain the contents of a standard match output
next_result
Title : next_result
Usage : $result = $obj->next_result();
Function: Returns the next result available from the input, or undef if there
are no more results.
Returns : Bio::SeqFeature::Annotated object. Features are annotated with tags
for 'matrix_score', 'matrix_id' and a 'predicted' tag.
Args : none
perl v5.14.2 2012-03-02 Bio::Tools::Match(3pm)