Sponsored Content
Top Forums Shell Programming and Scripting a column containing multiple patterns perl Post 302698395 by cdfd123 on Monday 10th of September 2012 03:57:16 AM
Old 09-10-2012
a column containing multiple patterns perl

Code:
If U have a question
if a file is 
33 ABC 276  LRR pir  UJU
45  BCD 777  HIGH pred IJJ
67  BGH  66  LRR_1 prcc KIK
77  GYH  88   LOW pol KKK

Quote:
So if each column in this file contain "LRR", "LOW", "HIGH" then print 1 otherwise 0
this command as below.

Code:
perl -lne '$a++ if /LRR/,/LOW/, /HIGH/; END {print $a+0}'

Quote:
Whether it is ok and any other option are there .....
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Perl: Match a line with multiple search patterns

Hi I'm not very good with the serach patterns and I'd need a sample how to find a line that has multiple patterns. Say I want to find a line that has "abd", "123" and "QWERTY" and there can be any characters or numbers between the serach patterns, I have a file that has thousands of lines and... (10 Replies)
Discussion started by: Juha
10 Replies

2. Shell Programming and Scripting

Perl - How to search a text file with multiple patterns?

Good day, great gurus, I'm new to Perl, and programming in general. I'm trying to retrieve a column of data from my text file which spans a non-specific number of lines. So I did a regexp that will pick out the columns. However,my pattern would vary. I tried using a foreach loop unsuccessfully.... (2 Replies)
Discussion started by: Sp3ck
2 Replies

3. Shell Programming and Scripting

Find multiple patterns on multiple lines and concatenate output

I'm trying to parse COBOL code to combine variables into one string. I have two variable names that get literals moved into them and I'd like to use sed, awk, or similar to find these lines and combine the variables into the final component. These variable names are always VAR1 and VAR2. For... (8 Replies)
Discussion started by: wilg0005
8 Replies

4. Shell Programming and Scripting

Search multiple patterns in multiple files

Hi, I have to write one script that has to search a list of numbers in certain zipped files. For eg. one file file1.txt contains the numbers. File1.txt contains 5,00,000 numbers and I have to search each number in zipped files(The number of zipped files are around 1000 each file is 5 MB) I have... (10 Replies)
Discussion started by: vsachan
10 Replies

5. Shell Programming and Scripting

searching multiple patterns in perl

Hi, I have code like: Output it is comming as: Rels: WM2 Rels: WG2 Rels: 5 - pre/prods.pl Rels: 6 Rels: 7 Rels: 8 Rels: 10 Rels: Int But i want only "Rels: 5" pattern Just above "- pre/prods.pl". By... (7 Replies)
Discussion started by: Anjan1
7 Replies

6. Shell Programming and Scripting

Joining multiple files based on one column with different and similar values (shell or perl)

Hi, I have nine files looking similar to file1 & file2 below. File1: 1 ABCA1 1 ABCC8 1 ABR:N 1 ACACB 1 ACAP2 1 ACOT1 1 ACSBG 1 ACTR1 1 ACTRT 1 ADAMT 1 AEN:N 1 AKAP1File2: 1 A4GAL 1 ACTBL 1 ACTL7 (4 Replies)
Discussion started by: seqbiologist
4 Replies

7. Shell Programming and Scripting

To print certain patterns in a column

Hi, From my input files, I want to print $1, $2 and only certain pattern in $4 (EC). I use this code but it print all the words in $4 awk -F"\t" '$4 {print $1,$2,$4}I just want EC follows by the numbers in $4 The input file as follows:- Entry Entry name Status Names Q01284 ... (7 Replies)
Discussion started by: redse171
7 Replies

8. Shell Programming and Scripting

Grep from multiple patterns multiple file multiple output

Hi, I want to grep multiple patterns from multiple files and save to multiple outputs. As of now its outputting all to the same file when I use this command. Input : 108 files to check for 390 patterns to check for. output I need to 108 files with the searched patterns. Xargs -I {} grep... (3 Replies)
Discussion started by: Diya123
3 Replies

9. Shell Programming and Scripting

Search and replace multiple patterns in a particular column only - efficient script

Hi Bigshots, I have a pattern file with two columns. I have another data file. If column 1 in the pattern file appears as the 4th column in the data file, I need to replace it (4th column of data file) with column 2 of the pattern file. If the pattern is found in any other column, it should not... (6 Replies)
Discussion started by: ss112233
6 Replies

10. UNIX for Dummies Questions & Answers

File merging based on column patterns

Hello :) I am in this situation: Input: two tab-delimited files, `File1` and `File2`. `File2` (`$2`) has to be parsed by patterns found in `File1` (`$1`). Expected output: tab-delimited file, `File3`. `File3` has to contain the same rows as `File2`, plus the corresponding value in... (5 Replies)
Discussion started by: dovah
5 Replies
SHELL-QUOTE(1)						User Contributed Perl Documentation					    SHELL-QUOTE(1)

NAME
shell-quote - quote arguments for safe use, unmodified in a shell command SYNOPSIS
shell-quote [switch]... arg... DESCRIPTION
shell-quote lets you pass arbitrary strings through the shell so that they won't be changed by the shell. This lets you process commands or files with embedded white space or shell globbing characters safely. Here are a few examples. EXAMPLES
ssh preserving args When running a remote command with ssh, ssh doesn't preserve the separate arguments it receives. It just joins them with spaces and passes them to "$SHELL -c". This doesn't work as intended: ssh host touch 'hi there' # fails It creates 2 files, hi and there. Instead, do this: cmd=`shell-quote touch 'hi there'` ssh host "$cmd" This gives you just 1 file, hi there. process find output It's not ordinarily possible to process an arbitrary list of files output by find with a shell script. Anything you put in $IFS to split up the output could legitimately be in a file's name. Here's how you can do it using shell-quote: eval set -- `find -type f -print0 | xargs -0 shell-quote --` debug shell scripts shell-quote is better than echo for debugging shell scripts. debug() { [ -z "$debug" ] || shell-quote "debug:" "$@" } With echo you can't tell the difference between "debug 'foo bar'" and "debug foo bar", but with shell-quote you can. save a command for later shell-quote can be used to build up a shell command to run later. Say you want the user to be able to give you switches for a command you're going to run. If you don't want the switches to be re-evaluated by the shell (which is usually a good idea, else there are things the user can't pass through), you can do something like this: user_switches= while [ $# != 0 ] do case x$1 in x--pass-through) [ $# -gt 1 ] || die "need an argument for $1" user_switches="$user_switches "`shell-quote -- "$2"` shift;; # process other switches esac shift done # later eval "shell-quote some-command $user_switches my args" OPTIONS
--debug Turn debugging on. --help Show the usage message and die. --version Show the version number and exit. AVAILABILITY
The code is licensed under the GNU GPL. Check http://www.argon.org/~roderick/ or CPAN for updated versions. AUTHOR
Roderick Schertler <roderick@argon.org> perl v5.16.3 2010-06-11 SHELL-QUOTE(1)
All times are GMT -4. The time now is 09:11 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy