Hello all,
I need to run snoop command for a period of time (a day) and extract remote host column from it to find out who is accessing my server. When I run the following on the command line it works
snoop -port 22 | awk '{print $3}'
but when I do
snoop -port 22 | awk '{print $3}' | while... (2 Replies)
Hi All,
Please help me writing the below script.
I have two sql queries.
1. Select count(1),Client_id from TABLE_A group by Client_id;
2. Select count(1),Client_id from TABLE_B group by Client_id;
I need the output of above two sql queries in a single file. The output 2nd query should be... (4 Replies)
Hello All
Nice to meet you all here in this forum,
it's my 1rst time here
i'm asking about a little issue that i face
i added a ksh script that echo " please insert your name " and store the output to a login.log file.
the script is working fine with normal telnet
but Xstart is not working... (8 Replies)
Hi,
I have a sybase stored procedure which takes two input parameters (start_date and end_date) and when it get executed, it gives few records as an output.
I want to write a unix script (ksh) which login to the sybase database, then execute this stored procedure (takes the input parameter as... (8 Replies)
Hello, I am quite new in shell scripting and I would like to write a little scritp to run a program on some parameters files.
all my parameters files are in the same directory, so pick them up with
ls *.para >>dirafter that I have a dir file like that:
param1.para
param2.para
etc...
I... (2 Replies)
Hi, I'm trying to store the output from a grep, I just want the file name.
But couldn't find how to do it.
Basically, I just want to grep <etc> * and I want to store the file name.
There is only one file with the what I'm grepping, so storing in a variable o an array its the same.
If someone... (3 Replies)
I have a script where the the 9th line looks like this:
$filename=sprintf("250.1chr%d.ped", $N);
I want to modify this script 1000 times, changing 250.1chr%d.ped to 250.2chr%d.ped, 250.3chr%.ped.......and so on all the way to 250.1000chr%d.ped and store each output in files called
... (4 Replies)
I am writing a cursor to select values from 3 tables. I want to store these values in a txt file which I will be sending via ftp. I am able to store the results of simple select queries to the txt file. but I am not sure how to store the values when using a cursor. I have given the sql query below.... (1 Reply)
Hi
I am trying to write output to a file in columns
I have file in the follwoing:
# cat file
abc
def
#
I am trying to write next output as like
# cat file
abc 123
def 345
#
:mad: (6 Replies)
Hello,
I am having problem while redirecting output to a file where as on console output is proper.
for dir in */; do printf "%s, " "$dir"; ls -m "$dir"; echo; done > output.txt
Output of above command is coming in single line but when i am redirecting output to a file, single line i... (10 Replies)
Discussion started by: Manoj Rajput
10 Replies
LEARN ABOUT DEBIAN
bp_process_wormbase
BP_PROCESS_WORMBASE(1p) User Contributed Perl Documentation BP_PROCESS_WORMBASE(1p)NAME
process_wormbase.pl - Massage WormBase GFF files into a version suitable for the Generic Genome Browser
SYNOPSIS
% process_wormbase.pl ./WS61 > wormbase.gff
DESCRIPTION
This script massages the Wormbase GFF files located at ftp://www.wormbase.org/pub/wormbase/GENE_DUMPS into a version of the GFF format
suitable for display by the generic genome browser. It mainly adds comments to the annotations and designates certain well-spaced genetic
loci as framework landmarks.
This script requires the AcePerl distribution, which is available on CPAN (look for the "Ace" module).
To use this script, get the WormBase GFF files from the FTP site listed above and place them in a directory. It might be a good idea to
name the directory after the current release, such as WS61. You do not need to uncompress the files.
Then give that directory as the argument to this script and capture the script's output to a file:
% process_wormbase.pl ./WS61 > wormbase.gff
It may take a while before you see output from this script, since it must first fetch gene and protein database from the remote AceDB
running at www.wormbase.org. The wormbase.gff file can then be loaded into a Bio::DB::GFF database using the following command:
% bulk_load_gff.pl -d <databasename> wormbase.gff
SEE ALSO
Bio::DB::GFF, bulk_load_gff.pl, load_gff.pl
AUTHOR
Lincoln Stein <lstein@cshl.org>
Copyright (c) 2002 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
perl v5.14.2 2012-03-02 BP_PROCESS_WORMBASE(1p)