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Full Discussion: PLINK help
Top Forums Shell Programming and Scripting PLINK help Post 302695519 by smitra on Monday 3rd of September 2012 05:09:45 AM
Old 09-03-2012
Hello,
I tried to use

Code:
 ./plink --noweb --fam myfile.fam --bim myfile.bim --make-bed --out myfile.bed

But still didn't work. Here is the error message below. Can anybody PLEASE HELP?

Many thanks in advance.

@----------------------------------------------------------@
| PLINK! | v1.07 | 10/Aug/2009 |
|----------------------------------------------------------|
| (C) 2009 Shaun Purcell, GNU General Public License, v2 |
|----------------------------------------------------------|
| For documentation, citation & bug-report instructions: |
| PLINK: Whole genome data analysis toolset |
@----------------------------------------------------------@

Skipping web check... [ --noweb ]
Writing this text to log file [ myfile.bed.log ]
Analysis started: Mon Sep 3 10:06:10 2012

Options in effect:
--noweb
--fam myfile.fam
--bim myfile.bim
--make-bed
--out myfile.bed

** For gPLINK compatibility, do not use '.' in --out **

ERROR: No file [ plink.bed ] exists.
 

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LEARN ABOUT XFREE86

mbk_out_lo

MBK_OUT_LO(1)						     MBK ENVIRONMENT VARIABLES						     MBK_OUT_LO(1)

NAME

       MBK_OUT_LO - define the logical output format of mbk and genlib

SYNOPSYS

       c-shell running
       setenv MBK_OUT_LO format

ORIGIN

       This  software  belongs	to  the  ALLIANCE CAD SYSTEM developed by the ASIM team at LIP6 laboratory of Universite Pierre et Marie CURIE, in
       Paris, France.

       Web : http://asim.lip6.fr/recherche/alliance/
       E-mail : alliance-users@asim.lip6.fr

PARAMETERS

       param		   pwet

DESCRIPTION

       MBK_OUT_LO sets the logical output format of the mbk data structure.  The files resulting of the work on mbk will have the given format.

       valid formats are :
	      - al, alx, that are alliance logical formats
	      - cct, that is genrad hilo netlist format
	      - edi, that is edif standart netlist format
	      - hns, fns, fne, fdn, hdn, that are vti logical formats
	      - spi, that's spice netlist
	      - vst, that is structural vhdl description

ERRORS

       "MBK_OUT_LO : 'xxx' unknown format"
	      The argument given to the setenv is not a legal logical output format for mbk.  You must changed it before any other action.

EXAMPLE

	    setenv MBK_OUT_LO al

SEE ALSO

       mbk(3), genlib(1), MBK_IN_LO(1).

BUG REPORT

       This tool is under development at the ASIM department of the LIP6 laboratory.
       We need your feedback to improve documentation and tools.

ASIM
/LIP6							  October 1, 1997						     MBK_OUT_LO(1)
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