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UNIX for Dummies Questions & Answers
extract regions of file based on start and end position
Post 302695167 by pathunkathunk on Saturday 1st of September 2012 07:46:53 PM
09-01-2012
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1. Shell Programming and Scripting
hi
In the foll example the whole text in a single line....
i want to extract text from IPTel to RTCPBase.h.
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2. UNIX for Dummies Questions & Answers
Hi,
I am a newbie in unix programming so maybe this is a simple question.
I would like to know how can I make a script that outputs only the values that are not between any given start and end positions
Example
file1:
2 30
40 80
82 100
file2:
ID1 1
ID2 35
ID3 80
ID4 81
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...........
...........
..........
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<Details = "Sample Details">
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</Details>
...........
.............
.............. (4 Replies)
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While I was writing one shell script , I just got struck at this point.
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The file has record length 200. And i have 100 search strings which are ten digits of character from 1 to 10 characters all of them are unique, they need to searched in a file. Please help me to pull the records based on position (say from 1-10).
test data
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6. Shell Programming and Scripting
Hello All,
Could you please help with this.
This is what I have:
506234.222 2
506234.222 2
506234.222 2
506234.222 2
508212.200 2
508212.200 2
333456.111 2
333456.111 2
333456.111 2
333456.111 2
But this is what I want:
506234.222 1
506234.222 2
506234.222 2
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Hi,
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Sample log file (log.txt)
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Hi all,
I have a file like this I want to extract only those regions which are big and continous
chr1 3280000 3440000
chr1 3440000 3920000
chr1 3600000 3920000 # region coming within the 3440000 3920000. so i don't want it to be printed in output
chr1 3920000 4800000
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Hi all,
I have a fasta file of a reference sequnce, I will like to retrieve sequences corresponding to a list of start and end position in another file
>my_ref_seq
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File content:
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