08-31-2012
PLINK help
Hi Plink users,
I am very new in GWAS and decided to use PLINK for this. But I am struggling with file formats.
I have one exome data with 200000 SNPs in it. But it is in .txt format. But all the necessary fields are there in different columns.
Can you please suggest me how I can create the plink .bed file?
Is there any direct way to create .bed file from .txt?
I tried to create a .bim and a .fam file following the instruction in PLINK website Binary files (BED/BIM/FAM)
Is there any way to create .bed file from these two (.bim & .fam) files?
Please let em know.
Thanks a lot,
Suparna.
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FAMD(8) SGI FAMD(8)
NAME
famd - The File Alteration Monitor (FAM) daemon
SYNOPSIS
famd [-CdflLv] [-C conffile] [-p prog.vers] [-t period] [-T timeout]
DESCRIPTION
FAM, the File Alteration Monitor, is a subsystem that applications can use to be notified when specific files or directories are changed.
It is intended as a replacement for mechanisms such as poll and select.
FAM comes in two parts: famd, the daemon that listens for requests and provides notifications, and libfam a library that client applica-
tions can use to communicate with FAM. For further information on libfam, see the fam(3) manual page.
famd is normally started by an Internet superserver such as inetd or xinetd, but can also be started independently. Only one instance of
famd can be run at a time.
famd can be configured by editing the famd configuration file (see fam.conf(5) for further details) or by providing the following command
line options:
OPTIONS
-c conffile
Read configuration information from conffile.
-C Run in backwards compatibilty mode. This is disables authentication and is not recommended.
-f Run in the foreground.
-v Enable verbose messages.
-d Enable verbose messages and debug messages.
-l Disable polling of files on remote NFS servers.
-L Only accept connections from local clients.
-r Detect read-only filesystems.
-p prog.vers
Register with the portmapper using the specifed RPC program and version numbers.
-P port
Bind to the specified TCP port instead of choosing at random.
-t period
Poll a remove NFS server every period seconds to obtain file updates if the remove server is not running famd.
-T timeout
Exit timeout seconds after the last client disconnects. A value of 0 causes famd to run forever.
SECURITY
famd never opens the files it's monitoring, and only monitors files that the client can stat.
FILES
/etc/fam.conf
Default famd configuration file.
SEE ALSO
fam(3), fam.conf(5), inetd(8), portmap(8), stat(1), xinetd(8)
BUGS
famd (fam 2.6.10) January 19, 2003 FAMD(8)