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Full Discussion: I/O bound computing clusters
Special Forums UNIX and Linux Applications High Performance Computing I/O bound computing clusters Post 302691811 by figaro on Saturday 25th of August 2012 07:39:30 PM
Old 08-25-2012
I/O bound computing clusters

I want to build a computing cluster and have been looking into grid solutions. My understanding from grid solutions is that participating nodes have to actually sign up to participate in a computation and that an isolated piece of work is sent to the node through a request from that node (pull). Along that reasoning, would a solution whereby a controlling machine sends work to whichever node is available not be a grid solution (push)?

The problem we will be solving is data-intensive, so we will be looking at an I/O bound problem. What methodology is used whereby the data sits on one machine and the nodes use that data? Could a partitioning of the database work, whereby a node only works on the data in the partition and no other?
 

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GRDSAMPLE(l)															      GRDSAMPLE(l)

NAME
grdsample - Resample a grd file onto a new grid SYNOPSIS
grdsample in_grdfile -Gout_grdfile [ -F ] [ -Idx[m|c][/dy[m|c]] ] [ -Lflag ] [ -Nnx/ny ] [ -Q ] [ -Rwest/east/south/north[r] ] [ -T ] [ -V ] DESCRIPTION
grdsample reads a grdfile and interpolates it to create a new grdfile with either: a different registration (-T); or, a new grid-spacing (-I) or number of nodes (-N), and perhaps also a new sub-region (-R). Interpolation is bicubic [Default] or bilinear (-Q) and uses boundary conditions (-L). Note that using (-R) only is equivalent to grdcut or grdedit -S. grdsample safely creates a fine mesh from a coarse one; the converse may suffer aliasing unless the data are filtered using grdfft or grdfilter. in_grdfile The name of the input 2-D binary grd file. -G The name of the output grd file. OPTIONS
No space between the option flag and the associated arguments. -F Force pixel registration. [Default is grid registration]. -I x_inc [and optionally y_inc] is the grid spacing. Append m to indicate minutes or c to indicate seconds. -L Boundary condition flag may be x or y or xy indicating data is periodic in range of x or y or both set by -R, or flag may be g indi- cating geographical conditions (x and y are lon and lat). [Default uses "natural" conditions (second partial derivative normal to edge is zero).] -N Specify number of columns nx and rows ny of new grid. -Q Quick mode, use bilinear rather than bicubic interpolation. -R west, east, south, and north specify the Region of interest. To specify boundaries in degrees and minutes [and seconds], use the dd:mm[:ss] format. Append r if lower left and upper right map coordinates are given instead of wesn. -T Translate between grid and pixel registration while keeping -R and -I the same; if input is grid-registered, output will be pixel- registered and vice-versa. The input file determines -R, -I and -N so no other options are necessary (except possibly -L or -Q). -V Selects verbose mode, which will send progress reports to stderr [Default runs "silently"]. HINTS
If an interpolation point is not on a node of the input grid, then a NaN at any node in the neighborhood surrounding the point will yield an interpolated NaN. Bicubic interpolation [default] yields continuous first derivatives but requires a neighborhood of 4 nodes by 4 nodes. Bilinear interpolation [-Q] uses only a 2 by 2 neighborhood, but yields only zeroth-order continuity. Use bicubic when smoothness is impor- tant. Use bilinear to minimize the propagation of NaNs. EXAMPLES
To resample the 5 x 5 minute grid in hawaii_5by5_topo.grd onto a 1 minute grid, try grdsample hawaii_5by5_topo.grd -I1m -Ghawaii_1by1_topo.grd To translate the gridline-registered file surface.grd to pixel registration, try grdsample surface.grd -T -Gpixel.grd SEE ALSO
gmt(1gmt), grdedit(1gmt), grdfft(1gmt), grdfilter(1gmt) 1 Jan 2004 GRDSAMPLE(l)
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