Hi Guys,
I need to set the value of $7 to zero in case $7 is NULL. I've tried the below command but doesn't work. Any ideas. thanks guys.
MEM=`ps v $PPID| grep -i db2 | grep -v grep| awk '{ if ( $7 ~ " " ) { print 0 } else { print $7}}' `
Harby. (4 Replies)
Hello,
I looking to use grep to return a string with exactly n matches.
I'm building off this:
ls -aLl /bin | grep '^.\{9\}x' | tr -s ' '
-rwxr-xr-x 1 root root 632816 Nov 25 2008 vi
-rwxr-xr-x 1 root root 632816 Nov 25 2008 view
-rwxr-xr-x 1 root root 16008 May 25 2008... (7 Replies)
Hello,
I'm working on unix with grep (GNU grep) 2.5.1. I'm going through some of the newer regex syntax using Regular Expression Reference - Advanced Syntax a guide.
ls -aLl /bin | grep "\(x\)"
Which works, just highlights 'x' where ever, when ever.
I'm trying to to get (?:) to work but... (4 Replies)
Hi All, I need to grep few files which has words like the below in the file name , which i want to put it in a file and and grep for the files which contain these names and move it to a new directory ,
full file name -C20091210.1000-20091210.1100_SMGBSC3:1000... (2 Replies)
Hi All,
Please i need to know the difference between grep, egrep & grep -i when used to serach through a file.
My platform is SunOS 5.9 & i'm using the korn shell.
Regards,
- divroro12 - (2 Replies)
I have a directory I need to grep which consists of numbered sub directories. The sub directory names change daily. A file resides in this main directory that shows which sub directories are FULL backups or INCREMENTAL backups.
My goal is to grep the directory for the word "full" and then... (2 Replies)
Hello.
I want to get all modules which are loaded and which name are exactly 2 characters long and not more than 2 characters and begin with "nv"
lsmod | (e)grep '^nv????????????
I want to get all modules which are loaded and which name begin with "nv" and are 2 to 7 characters long
... (1 Reply)
Hi,
I have a number of files containing the information below.
"""""
Fundallinfo
6.3950 14.9715 14.0482
"""""
I would like to grep for Fundallinfo and use it to read the next line? I ideally would like to read the three numbers that follow in the next line and... (2 Replies)
i have this line of code that looks for the same file if it is currently running and returns the count.
`ps -eaf -o args | grep -i sfs_pcard_load_file.ksh | grep -v grep | wc -l`
basically it is assigned to a variable
ISRUNNING=`ps -eaf -o args | grep -i sfs_pcard_load_file.ksh |... (6 Replies)
Discussion started by: wtolentino
6 Replies
LEARN ABOUT DEBIAN
pynast
VERSION:(1) User Commands VERSION:(1)NAME
PyNAST - alignment of short DNA sequences
SYNOPSIS
pynast [options] {-i input_fp -t template_fp}
DESCRIPTION
[] indicates optional input (order unimportant) {} indicates required input (order unimportant)
Example usage:
pynast -i my_input.fasta -t my_template.fasta
OPTIONS --version
show program's version number and exit
-h, --help
show this help message and exit
-t TEMPLATE_FP, --template_fp=TEMPLATE_FP
path to template alignment file [REQUIRED]
-i INPUT_FP, --input_fp=INPUT_FP
path to input fasta file [REQUIRED]
-v, --verbose
Print status and other information during execution [default: False]
-p MIN_PCT_ID, --min_pct_id=MIN_PCT_ID
minimum percent sequence identity to consider a sequence a match [default: 75.0]
-l MIN_LEN, --min_len=MIN_LEN
minimum sequence length to include in NAST alignment [default: 1000]
-m PAIRWISE_ALIGNMENT_METHOD, --pairwise_alignment_method=PAIRWISE_ALIGNMENT_METHOD
method for performing pairwise alignment [default: uclust]
-a FASTA_OUT_FP, --fasta_out_fp=FASTA_OUT_FP
path to store resulting alignment file [default: derived from input filepath]
-g LOG_FP, --log_fp=LOG_FP
path to store log file [default: derived from input filepath]
-f FAILURE_FP, --failure_fp=FAILURE_FP
path to store file of seqs which fail to align [default: derived from input filepath]
-e MAX_E_VALUE, --max_e_value=MAX_E_VALUE
Depreciated. Will be removed in PyNAST 1.2
-d BLAST_DB, --blast_db=BLAST_DB
Depreciated. Will be removed in PyNAST 1.2
SEE ALSO
http://pynast.sourceforge.net
Version: pynast 1.1 August 2011 VERSION:(1)