Hi Guys,
I need to set the value of $7 to zero in case $7 is NULL. I've tried the below command but doesn't work. Any ideas. thanks guys.
MEM=`ps v $PPID| grep -i db2 | grep -v grep| awk '{ if ( $7 ~ " " ) { print 0 } else { print $7}}' `
Harby. (4 Replies)
Hello,
I looking to use grep to return a string with exactly n matches.
I'm building off this:
ls -aLl /bin | grep '^.\{9\}x' | tr -s ' '
-rwxr-xr-x 1 root root 632816 Nov 25 2008 vi
-rwxr-xr-x 1 root root 632816 Nov 25 2008 view
-rwxr-xr-x 1 root root 16008 May 25 2008... (7 Replies)
Hello,
I'm working on unix with grep (GNU grep) 2.5.1. I'm going through some of the newer regex syntax using Regular Expression Reference - Advanced Syntax a guide.
ls -aLl /bin | grep "\(x\)"
Which works, just highlights 'x' where ever, when ever.
I'm trying to to get (?:) to work but... (4 Replies)
Hi All, I need to grep few files which has words like the below in the file name , which i want to put it in a file and and grep for the files which contain these names and move it to a new directory ,
full file name -C20091210.1000-20091210.1100_SMGBSC3:1000... (2 Replies)
Hi All,
Please i need to know the difference between grep, egrep & grep -i when used to serach through a file.
My platform is SunOS 5.9 & i'm using the korn shell.
Regards,
- divroro12 - (2 Replies)
I have a directory I need to grep which consists of numbered sub directories. The sub directory names change daily. A file resides in this main directory that shows which sub directories are FULL backups or INCREMENTAL backups.
My goal is to grep the directory for the word "full" and then... (2 Replies)
Hello.
I want to get all modules which are loaded and which name are exactly 2 characters long and not more than 2 characters and begin with "nv"
lsmod | (e)grep '^nv????????????
I want to get all modules which are loaded and which name begin with "nv" and are 2 to 7 characters long
... (1 Reply)
Hi,
I have a number of files containing the information below.
"""""
Fundallinfo
6.3950 14.9715 14.0482
"""""
I would like to grep for Fundallinfo and use it to read the next line? I ideally would like to read the three numbers that follow in the next line and... (2 Replies)
i have this line of code that looks for the same file if it is currently running and returns the count.
`ps -eaf -o args | grep -i sfs_pcard_load_file.ksh | grep -v grep | wc -l`
basically it is assigned to a variable
ISRUNNING=`ps -eaf -o args | grep -i sfs_pcard_load_file.ksh |... (6 Replies)
Discussion started by: wtolentino
6 Replies
LEARN ABOUT DEBIAN
muscle
MUSCLE(1) Muscle Manual MUSCLE(1)NAME
muscle - Multiple Protein Sequence Alignment
SYNOPSIS
muscle -in input file (fasta) [-out output file (default fasta)] [-diags] [-log log file] [-maxiters n] [-maxhours n] [-maxmb m] [-html]
[-msf] [-clw] [-clwstrict] [-log[a] logfile] [-quiet] [-stable] [-group] [-version]
DESCRIPTION
This manual page documents briefly the muscle command.
muscle aligns protein sequences and is considered superior and faster than Clustal W.
OPTIONS -in input file
Path to FASTA formatted input file
-out output file
Path to output file, FASTA formatted by default
-diags
Find diagonals (faster for similar sequences)
-maxiters n
Maximum number of iterations (integer, default 16)
-maxhours n
Maximum time to iterate in hours (default no limit)
-maxmb m
Maximum memory to allocate in Mb (default 80% of RAM)
-html
Write output in HTML format (default FASTA)
-msf
Write output in MSF format (default FASTA)
-clw
Write output in Clustal W format (default FASTA)
-clwstrict
As -clw, with 'CLUSTAL W (1.81)' header
-log[a] logfile
Log to file (append if -loga, overwrite if -log)
-quiet
Do not write progress messages to stderr
-stable
Output sequences in input order (default is -group)
-group
Group sequences by similarity (this is the default)
-version
Display version information and exit
SEE ALSO clustalw(1), seaview(1), t_coffee(1).
AUTHORS
Robert Elgar
Wrote Muscle.
Steffen Moeller <moeller@debian.org>
Wrote this manpage.
Charles Plessy <charles-debian-nospam@plessy.org>
Updated this manpage.
COPYRIGHT
Copyright (C) 2003, 2004 Steffen Moeller (manpage)
Copyright (C) 2007, 2008 Charles Plessy (manpage)
Muscle is in the public domain, and therefore not subjected to copyright.
This manual page was written by Steffen Moeller moeller@debian.org for the Debian(TM) system (but may be used by others). Permission is
granted to copy, distribute and/or modify this document as if it were in public domain.
muscle 3.7 02/06/2008 MUSCLE(1)