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Full Discussion: print the whole row in awk based on matched pattern
Top Forums Shell Programming and Scripting print the whole row in awk based on matched pattern Post 302684323 by redse171 on Thursday 9th of August 2012 12:14:55 PM
Old 08-09-2012
print the whole row in awk based on matched pattern
Hi,

I need some help on how to print the whole data for unmatched pattern. i have 2 different files that need to be checked and print out the unmatched patterns into a new file. My sample data as follows:-

File1.txt
Code:
Id    Num    Activity            Class                  Type 
309   1.1   Vit B6 metabolism    Met of Cofac & Vit    METABOLIC
10559 1.3   Vit B5 metabolism    Met of Sub            METABOLIC

File2.txt
Code:
ID            hit                      hit_annot
10559    Q12618|AC_AJA    Acyl-CoA  Ajello cap GN=OLE1 PE=3 SV=1
12509    Q5ZJF4|PR_CH     Perox-6 OS Gal GN=PRDX6 PE=2 SV=3

The output should print the 1st and 3rd column of file2.txt:
File3.txt
Code:
12509   Perox-6 OS Gal GN=PRDX6 PE=2 SV=3

when i use this script
Code:
nawk 'FNR==NR{f2[$1];next} !($1 in f2){print $1, $3}' File1.txt File2.txt> File3.txt

I managed to print the unmatched patterns and the desired column, but it only print the first word like:

12509 Perox-6

it ignores the rest of it (OS Gal GN=PRDX6 PE=2 SV=3). i need the script to print the whole content of the column as displayed above.

Can somebody here kindly help me on this. Thanks
Last edited by redse171; 08-09-2012 at 01:15 PM.. Reason: typo
 

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LEARN ABOUT CENTOS

locale::codes::langfam

Locale::Codes::LangFam(3)				User Contributed Perl Documentation				 Locale::Codes::LangFam(3)

NAME

       Locale::Codes::LangFam - standard codes for language extension identification

SYNOPSIS

	  use Locale::Codes::LangFam;

	  $lext = code2langfam('apa');		       # $lext gets 'Apache languages'
	  $code = langfam2code('Apache languages');    # $code gets 'apa'

	  @codes   = all_langfam_codes();
	  @names   = all_langfam_names();

DESCRIPTION

       The "Locale::Codes::LangFam" module provides access to standard codes used for identifying language families, such as those as defined in
       ISO 639-5.

       Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 639-5
       language family codes will be used.

SUPPORTED CODE SETS

       There are several different code sets you can use for identifying language families. A code set may be specified using either a name, or a
       constant that is automatically exported by this module.

       For example, the two are equivalent:

	  $lext = code2langfam('apa','alpha');
	  $lext = code2langfam('apa',LOCALE_LANGFAM_ALPHA);

       The codesets currently supported are:

       alpha
	   This is the set of three-letter (lowercase) codes from ISO 639-5 such as 'apa' for Apache languages.

	   This is the default code set.

ROUTINES

       code2langfam ( CODE [,CODESET] )
       langfam2code ( NAME [,CODESET] )
       langfam_code2code ( CODE ,CODESET ,CODESET2 )
       all_langfam_codes ( [CODESET] )
       all_langfam_names ( [CODESET] )
       Locale::Codes::LangFam::rename_langfam  ( CODE ,NEW_NAME [,CODESET] )
       Locale::Codes::LangFam::add_langfam  ( CODE ,NAME [,CODESET] )
       Locale::Codes::LangFam::delete_langfam  ( CODE [,CODESET] )
       Locale::Codes::LangFam::add_langfam_alias  ( NAME ,NEW_NAME )
       Locale::Codes::LangFam::delete_langfam_alias  ( NAME )
       Locale::Codes::LangFam::rename_langfam_code  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangFam::add_langfam_code_alias  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangFam::delete_langfam_code_alias  ( CODE [,CODESET] )
	   These routines are all documented in the Locale::Codes::API man page.

SEE ALSO

       Locale::Codes
	   The Locale-Codes distribution.

       Locale::Codes::API
	   The list of functions supported by this module.

       http://www.loc.gov/standards/iso639-5/id.php
	   ISO 639-5 .

AUTHOR

       See Locale::Codes for full author history.

       Currently maintained by Sullivan Beck (sbeck@cpan.org).

COPYRIGHT

	  Copyright (c) 2011-2013 Sullivan Beck

       This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

perl v5.16.3							    2013-02-27						 Locale::Codes::LangFam(3)
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