Hi ALL,
I'm new to this forum.
Thanks and congrats to all for their great efforts building this site simply superb for all unix administrators.
My requirement is to remove extensions of the files in the current directory. I'm doing it using below script which is working but i think it is... (12 Replies)
hello
i have 2 question
if i have 1 folder and under this folder many many sub folders and in every folders many files with man extension like *php * jpg * gif
i need to remove all *php files
1- from tha main folder only
2- from tha main folder and all sub folders
the second how... (6 Replies)
Hi,
I have a perl script which is a part of a shell script which read lines from a flat file(which is generated as part of a script after a series of bteq/fexp) and assigns a value for each object in the file based on the type of file name. (i.e extensions like .bteq/.ctl/.ksh etc)
For example,... (1 Reply)
Hi,
I have some files with some extension e.g. abc.xml.REMOVE,xyz.xml,efg.xml.REMOVE .
I have to remove the .REMOVE extension. I can display it using the below script but cannot rename it.
ls -l|sed 's/\.REMOVE//'
How can I rename this?
Thanks in advance (7 Replies)
Hi all
i am new for the shell scripting can any one help me with my requirments . i want to delete file older than 21 days everything works fine but in that dir i got the files with should not be deleted with particular extension like (.info):confused:here is the script i wrote .can anyone... (5 Replies)
hi,
i have a directory which contains some files and a subdirectory. i am writing only the files names to a file using the below code.
ls -ltr | grep "^-" | awk '{print $NF}' > /home/file_list$$
cat /home/file_list$$
s1_abc.txt
s2_def.xls
s3_def.xls
as you can see there is one .txt... (7 Replies)
Hello Guy's
Quick question which im sure many can answer in seconds. Basically I have a perl script which is running commands to an element and then taking some of the
the output and printing it to the screen. One of the outputs is a variable Hex Number. What I would like to do is strip... (1 Reply)
Dear all
sorry for bothering you wityh dumb question but I am stucked with an issue.
Well, I am trying to loop over files in folder, make an operation and rewrite the output.
Example:
INPUT
file1.txt
file2.txt
file3.txtMy command (doesn't work!!)
for file in /path/to/*.txt
do command... (13 Replies)
The bash below executes and does find all the .bam files in each R_2019 folder. However set -x shows that the .bam extension only gets removed from one .bam file in each folder (appears to be the last in each). Why is it not removing the extension from each (this is $SAMPLE)? Thank you :).
set... (4 Replies)
Discussion started by: cmccabe
4 Replies
LEARN ABOUT DEBIAN
asn2xml
ASN2XML(1) NCBI Tools User's Manual ASN2XML(1)NAME
asn2xml - translate biological data from ASN.1 to XML
SYNOPSIS
asn2xml [-] [-b F] [-e] [-i filename] [-l filename] [-o filename] [-s]
DESCRIPTION
asn2xml converts an NCBI Seq-entry or Bioseq-set from ASN.1 format to an isomorphic XML representation. It differs from asn2asn -x in that
it converts packed sequence data back into human-readable ASCII text.
OPTIONS
A summary of options is included below.
- Print usage message
-b F Input asnfile in text mode
-e Input is a Seq-entry
-i filename
Read ASN.1 from filename (default is stdin)
-l filename
Log errors to filename (default is stderr)
-o filename
Write XML to filename (default is stdout)
-s Input is a Seq-submit
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO asn2all(1), asn2asn(1), asn2ff(1), asn2fsa(1), asn2gb(1), asndhuff(1), gene2xml(1), /usr/share/doc/ncbi-tools-bin/README.asn2xml,
/usr/share/doc/libncbi6/ncbixml.txt.gz
NCBI 2005-05-16 ASN2XML(1)